KCC002872A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002872A_C01 KCC002872A_c01
tgtcaatccaatatactttATGATGGCGTCCAGCATGCTTCATTCCAGTGCGAGGTGCGC
GGCTTTCAAGGCCGGCCCTCTTCGCTCTCCACAATTCGCCCTGCGTCCTCGTGCTACTGT
TTCTTTGTCCGCCGTTAAGTCGTCATCGGAGGCTTCTTCTTCCAGCGCTTGCTCCACGAG
CGAGCGGCAGGCACACCCACTCGCTCGATTGGAGGTCGCCACCGTTGCGTCGCTTCTTGC
CAGCGGCGCCCTGGCAGGCAGCTGTCTAGCTGCCGATAGCCCGGAGAATGCGGAGCAGAC
TGTCCAGCTCGCGGCGCTGGCAGCCAACATCCTCCGCCCTGCGTTCAACATCTTTACGCT
GCTGTACATCATCCGCGTGCCCATGACCTGGTACCCGGAGATAGACGGCAAGAAGATGCC
GTGGGCGCTCGCCTACGCGCCCACGGAGCCGGTGCTGAGCGTCGCGCGCAAGGTGGTGCC
GCTGCTCAGCGGCGTGGACGTCAGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002872A_C01 KCC002872A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA96886.1| gene_id:MAB16.6~pir||S76575~similar to unknown p...    76  2e-13
ref|NP_198461.2| expressed protein [Arabidopsis thaliana] gi|202...    76  2e-13
dbj|BAC05622.1| P0458E05.22 [Oryza sativa (japonica cultivar-gro...    74  8e-13
ref|NP_484983.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    62  4e-09
ref|NP_924956.1| hypothetical protein gsr2010 [Gloeobacter viola...    61  7e-09

>dbj|BAA96886.1| gene_id:MAB16.6~pir||S76575~similar to unknown protein [Arabidopsis
           thaliana]
          Length = 213

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 47/65 (71%)
 Frame = +2

Query: 311 AALAANILRPAFNIFTLLYIIRVPMTWYPEIDGKKMPWALAYAPTEPVLSVARKVVPLLS 490
           A LA  IL PA + F  L+I+R+ M+WYP++   K P+ LAYAPTEP+L   RKV+P L+
Sbjct: 79  AKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLA 138

Query: 491 GVDVS 505
           GVDV+
Sbjct: 139 GVDVT 143

>ref|NP_198461.2| expressed protein [Arabidopsis thaliana] gi|20260188|gb|AAM12992.1|
           putative protein [Arabidopsis thaliana]
           gi|21387037|gb|AAM47922.1| putative protein [Arabidopsis
           thaliana]
          Length = 174

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 35/65 (53%), Positives = 47/65 (71%)
 Frame = +2

Query: 311 AALAANILRPAFNIFTLLYIIRVPMTWYPEIDGKKMPWALAYAPTEPVLSVARKVVPLLS 490
           A LA  IL PA + F  L+I+R+ M+WYP++   K P+ LAYAPTEP+L   RKV+P L+
Sbjct: 79  AKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLA 138

Query: 491 GVDVS 505
           GVDV+
Sbjct: 139 GVDVT 143

>dbj|BAC05622.1| P0458E05.22 [Oryza sativa (japonica cultivar-group)]
          Length = 197

 Score = 74.3 bits (181), Expect = 8e-13
 Identities = 42/113 (37%), Positives = 60/113 (52%), Gaps = 19/113 (16%)
 Frame = +2

Query: 224 VASLLASGALAGSC---LAADSPENAEQTVQ----------------LAALAANILRPAF 346
           VA+   + A+ G C    AA +PE   Q V                  A  A  +  PA 
Sbjct: 55  VAAATTAAAMTGQCHAAAAAAAPERQWQEVAEWVCRAVAVVGELDPATAKAAIGVAGPAL 114

Query: 347 NIFTLLYIIRVPMTWYPEIDGKKMPWALAYAPTEPVLSVARKVVPLLSGVDVS 505
           + F  L+I R+ M+WYP +  ++ P+ +AYAPTEP+L+V RKV+P L GVDV+
Sbjct: 115 SAFGFLFIARIVMSWYPRLPVREFPYVVAYAPTEPLLAVTRKVIPPLGGVDVT 167

>ref|NP_484983.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25535077|pir||AI1923
           hypothetical protein asl0940 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17130286|dbj|BAB72897.1|
           ORF_ID:asl0940~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 97

 Score = 62.0 bits (149), Expect = 4e-09
 Identities = 26/63 (41%), Positives = 41/63 (64%)
 Frame = +2

Query: 317 LAANILRPAFNIFTLLYIIRVPMTWYPEIDGKKMPWALAYAPTEPVLSVARKVVPLLSGV 496
           L+  IL P   + T L+I R+ +TWYP++D  ++P+ L   PTEP L   RK++P + GV
Sbjct: 6   LSVWILGPVLGVMTFLFIFRIILTWYPQVDLNRLPFNLIAWPTEPFLIPLRKIIPPIGGV 65

Query: 497 DVS 505
           D++
Sbjct: 66  DIT 68

>ref|NP_924956.1| hypothetical protein gsr2010 [Gloeobacter violaceus]
           gi|35212577|dbj|BAC89951.1| gsr2010 [Gloeobacter
           violaceus]
          Length = 97

 Score = 61.2 bits (147), Expect = 7e-09
 Identities = 25/63 (39%), Positives = 41/63 (64%)
 Frame = +2

Query: 317 LAANILRPAFNIFTLLYIIRVPMTWYPEIDGKKMPWALAYAPTEPVLSVARKVVPLLSGV 496
           + AN LR  F+++ LL++ R+ +TW+P++D  + P+     PTEP L   RKV+P   GV
Sbjct: 6   IVANALRLLFSLYILLFLFRIVLTWFPQLDLNRPPYNFVAWPTEPFLRPTRKVIPTFGGV 65

Query: 497 DVS 505
           D++
Sbjct: 66  DMT 68



EST assemble image


clone accession position
1 LCL018e05_r AV626941 1 506
2 LC030b01_r AV621023 20 468
3 MX208h08_r BP089515 67 435




Chlamydomonas reinhardtii
Kazusa DNA Research Institute