>KCC002871A_C01 KCC002871A_c01
gaggtcgttagtgcgactgcgggtgtggtcgacgagcgattgcgtgcaggtggctgctgt
gccgttatgcctgtctagccCCGTGCTTTGTGCAATGCCCTTACGCACTTGTTGAGTGCG
CGAGAAAGAGGACGCATGGCGGCCTGCTGGCATTCGGGCGCTTGCTGTAGAGATGTAGTT
GTAGCGTGTGTAGCAGGACTTGCAGTCGGTCCAGGAGACCAGAGGTTGCAAAGGTCCAGG
CATAGGTACCTGCAGTCGCCACGTACGCAATAGGCACGGTGTGAGGGTTGGGGCGAGTTC
TGTTACGATGTCACGGGCGCTTCGGCTGTCTGCGGCATGCTGCTAATTGCATGGCAGGGC
CGGGCGCTGCTCCGCGTTTCTCGACGCTGTGGAATTGCGTGCGTGGACGTGCTACTGGAT
ACGATCTGGGTGGCCCGATGTGTTCGTATGGCTTCTGGGGGCCTGCAAGTCGTTTGCTGC
CAGCTCCGGTGATGTAGAATATGTAGATTAGATGTAGATTATGTGTGTGCGGTTGTGCAC
ACTTAAGACGTAGATGCAATGTGCTGGCAGGGGCTGCTGCGTCGTGCTCAGGCTGCGGAC
GAGGAGTCT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002871A_C01 KCC002871A_c01
         (609 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_215127.2| similar to secreted gel-forming mucin [Rattus n...    33  0.27
ref|XP_347180.1| similar to MUC6 [Rattus norvegicus]                   33  0.27
dbj|BAC21707.1| mucin 6 [Rattus norvegicus]                            33  0.29
dbj|BAC87252.1| unnamed protein product [Homo sapiens]                 36  0.49
sp|P56699|CCAE_DISOM Probable voltage-dependent R-type calcium c...    35  0.64

>ref|XP_215127.2| similar to secreted gel-forming mucin [Rattus norvegicus]
          Length = 2806

 Score = 33.5 bits (75), Expect(2) = 0.27
 Identities = 37/110 (33%), Positives = 49/110 (43%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605  SSSAA*ARRSSPCQHIASTS*VCTTAHT*STSNLHILHHRSWQQTTCRP-PEAIRTHRAT 429
            +S A+   ++    H+ +T+ V +T HT   S        S Q  T  P P A++T  AT
Sbjct: 1936 TSGASTTPQAGSSTHLPTTAAVSSTKHTTGVSL-----ETSVQTNTASPTPSALQTSLAT 1990

Query: 428  QIVSSSTSTHAIPQRRETRSSARPCHAISS-MPQTAEA---PVTS*QNSP 291
               S STS  A+ Q  E   +  P H ISS    TA A   P T  Q  P
Sbjct: 1991 TPPSFSTS--AVTQTSEVIVTPTPQHTISSASTSTARATILPTTLEQTRP 2038

 Score = 21.9 bits (45), Expect(2) = 0.27
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 301  RTRPNPHTVPIAYVATAGTYAWTFAT 224
            +TRP   + P+ Y   A T   TF+T
Sbjct: 2035 QTRPPHTSAPVIYTTGAITQTKTFST 2060

>ref|XP_347180.1| similar to MUC6 [Rattus norvegicus]
          Length = 1787

 Score = 33.5 bits (75), Expect(2) = 0.27
 Identities = 37/110 (33%), Positives = 49/110 (43%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605  SSSAA*ARRSSPCQHIASTS*VCTTAHT*STSNLHILHHRSWQQTTCRP-PEAIRTHRAT 429
            +S A+   ++    H+ +T+ V +T HT   S        S Q  T  P P A++T  AT
Sbjct: 824  TSGASTTPQAGSSTHLPTTAAVSSTKHTTGVSL-----ETSVQTNTASPTPSALQTSLAT 878

Query: 428  QIVSSSTSTHAIPQRRETRSSARPCHAISS-MPQTAEA---PVTS*QNSP 291
               S STS  A+ Q  E   +  P H ISS    TA A   P T  Q  P
Sbjct: 879  TPPSFSTS--AVTQTSEVIVTPTPQHTISSASTSTARATILPTTLEQTRP 926

 Score = 33.5 bits (75), Expect(2) = 0.27
 Identities = 37/110 (33%), Positives = 49/110 (43%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605  SSSAA*ARRSSPCQHIASTS*VCTTAHT*STSNLHILHHRSWQQTTCRP-PEAIRTHRAT 429
            +S A+   ++    H+ +T+ V +T HT   S        S Q  T  P P A++T  AT
Sbjct: 1333 TSGASTTPQAGSSTHLPTTAAVSSTKHTTGVSL-----ETSVQTNTASPTPSALQTSLAT 1387

Query: 428  QIVSSSTSTHAIPQRRETRSSARPCHAISS-MPQTAEA---PVTS*QNSP 291
               S STS  A+ Q  E   +  P H ISS    TA A   P T  Q  P
Sbjct: 1388 TPPSFSTS--AVTQTSEVIVTPTPQHTISSASTSTARATILPTTLEQTRP 1435

 Score = 33.5 bits (75), Expect(2) = 0.27
 Identities = 37/110 (33%), Positives = 49/110 (43%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605 SSSAA*ARRSSPCQHIASTS*VCTTAHT*STSNLHILHHRSWQQTTCRP-PEAIRTHRAT 429
           +S A+   ++    H+ +T+ V +T HT   S        S Q  T  P P A++T  AT
Sbjct: 315 TSGASTTPQAGSSTHLPTTAAVSSTKHTTGVSL-----ETSVQTNTASPTPSALQTSLAT 369

Query: 428 QIVSSSTSTHAIPQRRETRSSARPCHAISS-MPQTAEA---PVTS*QNSP 291
              S STS  A+ Q  E   +  P H ISS    TA A   P T  Q  P
Sbjct: 370 TPPSFSTS--AVTQTSEVIVTPTPQHTISSASTSTARATILPTTLEQTRP 417

 Score = 21.9 bits (45), Expect(2) = 0.27
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 301  RTRPNPHTVPIAYVATAGTYAWTFAT 224
            +TRP   + P+ Y   A T   TF+T
Sbjct: 1432 QTRPPHTSAPVIYTTGAITQTKTFST 1457

 Score = 21.9 bits (45), Expect(2) = 0.27
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 301  RTRPNPHTVPIAYVATAGTYAWTFAT 224
            +TRP   + P+ Y   A T   TF+T
Sbjct: 923  QTRPPHTSAPVIYTTGAITQTKTFST 948

 Score = 21.9 bits (45), Expect(2) = 0.27
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 301 RTRPNPHTVPIAYVATAGTYAWTFAT 224
           +TRP   + P+ Y   A T   TF+T
Sbjct: 414 QTRPPHTSAPVIYTTGAITQTKTFST 439

>dbj|BAC21707.1| mucin 6 [Rattus norvegicus]
          Length = 573

 Score = 33.5 bits (75), Expect(2) = 0.29
 Identities = 37/110 (33%), Positives = 49/110 (43%), Gaps = 5/110 (4%)
 Frame = -2

Query: 605 SSSAA*ARRSSPCQHIASTS*VCTTAHT*STSNLHILHHRSWQQTTCRP-PEAIRTHRAT 429
           +S A+   ++    H+ +T+ V +T HT   S        S Q  T  P P A++T  AT
Sbjct: 308 TSGASTTPQAGSSTHLPTTAAVSSTKHTTGVSL-----ETSVQTNTASPTPSALQTSLAT 362

Query: 428 QIVSSSTSTHAIPQRRETRSSARPCHAISS-MPQTAEA---PVTS*QNSP 291
              S STS  A+ Q  E   +  P H ISS    TA A   P T  Q  P
Sbjct: 363 TPPSFSTS--AVTQTSEVIVTPTPQHTISSASTSTARATILPTTLEQTRP 410

 Score = 21.9 bits (45), Expect(2) = 0.29
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 301 RTRPNPHTVPIAYVATAGTYAWTFAT 224
           +TRP   + P+ Y   A T   TF+T
Sbjct: 407 QTRPPHTSAPVIYTTGAITQTKTFST 432

>dbj|BAC87252.1| unnamed protein product [Homo sapiens]
          Length = 654

 Score = 35.8 bits (81), Expect = 0.49
 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
 Frame = -2

Query: 497 LHHRSWQQTTCRPPEAIRTHRATQIVSSSTSTHAIPQRRETRSSARPCHAISSMPQTAEA 318
           L H    +TT  PP   R  R   + SS    H    RR +R      H++ S+  T  A
Sbjct: 322 LRHEDGDETTEPPPSGCRDRRRASVCSSGGGEHRGLDRRRSRR-----HSVQSIKSTLSA 376

Query: 317 PVTS*QNSPQPSHRAYCVRGDCR--YLCLDLCNLWSPGPTASPATHATTTSLQQAPE 153
           P TS  +   PS +   VR D R  Y      +  S  P++  +   T TS    P+
Sbjct: 377 P-TSPCSQSAPSFKPNQVR-DLREKYSNFGNNSYHSSRPSSGSSVPTTPTSSVSPPQ 431

>sp|P56699|CCAE_DISOM Probable voltage-dependent R-type calcium channel alpha-1E subunit
            (DOE-1) gi|476977|pir||A47447 calcium channel protein
            alpha-1 chain (variant doe-1) - electric ray (Discopyge
            ommata)
          Length = 2223

 Score = 35.4 bits (80), Expect = 0.64
 Identities = 37/143 (25%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
 Frame = -2

Query: 581  RSSPCQHIASTS*-VCTTAHT*STSNLHILHHRSWQQTTCRPPEAIRTHRATQIVSSSTS 405
            RS   +H+ S    VC+T         H   HR   Q   R P    +HR  + V+SS S
Sbjct: 2000 RSRERKHLLSPERSVCSTGQC-----AHPSQHRGLDQRLSRSPSPGYSHRPREQVNSSVS 2054

Query: 404  THAIPQRRETRSSARPCHAISSMPQTAEAPVTS*QNSPQPSHRAYCVRGDCRYLCLDLCN 225
               +P    +  ++ P      +PQT   P       P  S+     RGD    C  +C 
Sbjct: 2055 ESPVP---SSSGTSPPKQGQRQLPQTPSKP------RPLVSYSPVAQRGDVSGHCSPMCK 2105

Query: 224  --------------LWSPGPTAS 198
                          LWS  P  S
Sbjct: 2106 ETRYQSLRVQPSKALWSESPGRS 2128

EST assemble image

clone accession position 1 LC088a10_r AV625114 1 475 2 LC059e08_r AV623145 93 590 3 LC029h06_r AV621009 112 609

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