KCC002870A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002870A_C01 KCC002870A_c01
GCGAGTCAATATATACACGCAATCCGTGGCATACTACTCAGCGCCACCGGCAAGGGGCCT
GCGAACCTCAAGACGCGATTGAATGAAGCCAGCAAACTTTTTGCAGTAAGCGCCACACAT
TGAGCTTATGCACACATCTGTAAGAATACAGGAAGCAGTATTTTAGTTTCGGCGCGGGTC
TTTCGCGCAGCCGGCGCGGAGGCGACCGGTCGGCTTCAGCGTTTATCGCCCGTTTCACCG
TCAATAGTATAGTCATAACAACGTAACATGGGAAAGGCTAAGCCCGCCAAGCACACTGCT
AAGGAAATTGCCCAAAAGGTTGCAGCGGCAACGACAAACAAGGGTGGTGGCCAGGCGGGC
CTCGCGGACCGGTTGGGCGGCAAGGTTGGGCACGCCAAGTTCCAGTGCAACATTTGCAAG
CAGCAGGCACCGGACCTAAAGAGCATGCAGATGCACTTTGAAGCCCGCCACCCCAAGGAC
CTGTGGGAGCCGGAGAAGTGCACGGACCTGCACGCCATGGTGGGCGGCGTCACACACAGG
GCGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002870A_C01 KCC002870A_c01
         (545 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC33094.1| hypothetical protein [Rhodomonas sp. CS24]            105  5e-22
ref|NP_566182.1| zinc finger (C2H2 type) protein family [Arabido...   103  1e-21
ref|NP_197151.1| zinc finger (C2H2 type) protein family [Arabido...    95  5e-19
ref|XP_315615.1| ENSANGP00000018311 [Anopheles gambiae] gi|30175...    44  0.001
ref|XP_315614.1| ENSANGP00000024785 [Anopheles gambiae] gi|21299...    44  0.001

>emb|CAC33094.1| hypothetical protein [Rhodomonas sp. CS24]
          Length = 124

 Score =  105 bits (261), Expect = 5e-22
 Identities = 48/88 (54%), Positives = 60/88 (67%)
 Frame = +1

Query: 274 KAKPAKHTAKEIAQKVAAATTNKGGGQAGLADRLGGKVGHAKFQCNICKQQAPDLKSMQM 453
           K   AKHT+ E+A K A AT N GGG+AGL DR GGK GHAKF C  CK QA  +K+MQ 
Sbjct: 17  KGVAAKHTSGEVASKTALATRNAGGGKAGLQDRKGGKAGHAKFICPECKMQAASMKNMQD 76

Query: 454 HFEARHPKDLWEPEKCTDLHAMVGGVTH 537
           H++++HPKD+ +P  C +   M GG TH
Sbjct: 77  HYDSKHPKDVLDPAACQNAQEMHGGSTH 104

>ref|NP_566182.1| zinc finger (C2H2 type) protein family [Arabidopsis thaliana]
           gi|6728983|gb|AAF26981.1|AC018363_26 unknown protein
           [Arabidopsis thaliana]
           gi|13605547|gb|AAK32767.1|AF361599_1 AT3g02790/F13E7_27
           [Arabidopsis thaliana] gi|16323296|gb|AAL15403.1|
           AT3g02790/F13E7_27 [Arabidopsis thaliana]
          Length = 105

 Score =  103 bits (258), Expect = 1e-21
 Identities = 50/88 (56%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
 Frame = +1

Query: 271 GKAKPAKHTAKEIAQKVAAATTNKGGGQAGLADRLG-GKVGHAKFQCNICKQQAPDLKSM 447
           GKAKP KHTAKEI  K+ AA TN+GGG+AG+ADR G  K GHAK++C  CK  AP LK+M
Sbjct: 3   GKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLKTM 62

Query: 448 QMHFEARHPKDLWEPEKCTDLHAMVGGV 531
           Q+H E++HP  ++E  K  +LHA++  V
Sbjct: 63  QIHHESKHPNIIYEESKLVNLHAVLAPV 90

>ref|NP_197151.1| zinc finger (C2H2 type) protein family [Arabidopsis thaliana]
           gi|9759129|dbj|BAB09614.1|
           gb|AAF26981.1~gene_id:MQK4.20~similar to unknown protein
           [Arabidopsis thaliana] gi|27808636|gb|AAO24598.1|
           At5g16470 [Arabidopsis thaliana]
          Length = 104

 Score = 95.1 bits (235), Expect = 5e-19
 Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
 Frame = +1

Query: 271 GKAKPAKHTAKEIAQKVAAATTNKGGGQAGLADRLG-GKVGHAKFQCNICKQQAPDLKSM 447
           GKAKP KHTAKE+  K  AA TN+GGG+AGLADR G  K GHAK++C  CK   PDLK+M
Sbjct: 3   GKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLKTM 62

Query: 448 QMHFEARHPKDLWE 489
           Q+H E++HPK  +E
Sbjct: 63  QIHHESKHPKLTYE 76

>ref|XP_315615.1| ENSANGP00000018311 [Anopheles gambiae] gi|30175718|gb|EAA11947.2|
           ENSANGP00000018311 [Anopheles gambiae str. PEST]
          Length = 78

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 23/64 (35%), Positives = 36/64 (55%)
 Frame = +1

Query: 289 KHTAKEIAQKVAAATTNKGGGQAGLADRLGGKVGHAKFQCNICKQQAPDLKSMQMHFEAR 468
           K  +++ AQ+ AA    + G   GL+D++        F C +CK Q PD K+ + HFE +
Sbjct: 8   KIQSQQKAQEKAAKLKKQQGH--GLSDQMKAAQKALVFSCAVCKSQMPDPKTYKQHFENK 65

Query: 469 HPKD 480
           HPK+
Sbjct: 66  HPKN 69

>ref|XP_315614.1| ENSANGP00000024785 [Anopheles gambiae] gi|21299311|gb|EAA11456.1|
           ENSANGP00000024785 [Anopheles gambiae str. PEST]
          Length = 77

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 23/64 (35%), Positives = 36/64 (55%)
 Frame = +1

Query: 289 KHTAKEIAQKVAAATTNKGGGQAGLADRLGGKVGHAKFQCNICKQQAPDLKSMQMHFEAR 468
           K  +++ AQ+ AA    + G   GL+D++        F C +CK Q PD K+ + HFE +
Sbjct: 7   KIQSQQKAQEKAAKMKKQQGH--GLSDQMKAAQKALVFSCAVCKSQMPDPKTYKQHFENK 64

Query: 469 HPKD 480
           HPK+
Sbjct: 65  HPKN 68



EST assemble image


clone accession position
1 LC028g05_r AV620930 1 412
2 LC030d05_r AV621044 96 639
3 MX007e02_r BP086373 100 494




Chlamydomonas reinhardtii
Kazusa DNA Research Institute