KCC002868A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002868A_C01 KCC002868A_c01
aggcATAACACCCGTTCTACTACTTTAACCAACATGGAGAACCCTCTTGCGCAATGTTGG
CCAGTTCTTTGGTGGTGCTCTGCTGCGCTGCGCAGCAGCACCCGTTTGCCCAGAATGCTC
AGAAGGCGATCAAGCGCTTCCAGGAGCAGAACGAGGAGCGTGAGCGCGCCGCCCGGCTGC
CGCCCCGCATCGTGAGCCTGCCGCGCTACGCGCCCGTGGCTGCCATCATCCCAGGCGACT
CCACGGCCGAGCTGGTGCTCACCAACGGCCTCTACAACTTCCTGAACCTGTACAACACCG
CCCTCATCGTGCGCCTGGTGCTGACGTGGTTCCCCAACCCGCCCGAGTTCCTGGTCACCC
CCCTCTCCACTGTGTGTGACCCCTACCTGAACCTGTTCCGCGGTCTCATCCCGCCGCTGG
GCGGCAGTCTGGACTTCTCGCCCATCCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002868A_C01 KCC002868A_c01
         (449 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_680180.1| expressed protein [Arabidopsis thaliana] gi|133...   120  5e-27
gb|AAO13463.1| Hypothetical protein [Oryza sativa (japonica cult...   117  4e-26
ref|NP_681324.1| ORF_ID:tsr0534~hypothetical protein [Thermosyne...    74  6e-13
ref|NP_194528.1| expressed protein [Arabidopsis thaliana] gi|748...    68  3e-11
gb|AAM64721.1| unknown [Arabidopsis thaliana]                          68  3e-11

>ref|NP_680180.1| expressed protein [Arabidopsis thaliana]
           gi|13374851|emb|CAC34485.1| putative protein
           [Arabidopsis thaliana] gi|26451921|dbj|BAC43053.1|
           unknown protein [Arabidopsis thaliana]
           gi|28950811|gb|AAO63329.1| At5g21920 [Arabidopsis
           thaliana] gi|29294067|gb|AAO73904.1| expressed protein
           [Arabidopsis thaliana]
          Length = 251

 Score =  120 bits (300), Expect = 5e-27
 Identities = 56/77 (72%), Positives = 65/77 (83%)
 Frame = +3

Query: 219 AAIIPGDSTAELVLTNGLYNFLNLYNTALIVRLVLTWFPNPPEFLVTPLSTVCDPYLNLF 398
           AA++PGDS A LV+ NGL NFLN+YNT L+VRLVLTWFP+ P  +V PLST+CDPYLN+F
Sbjct: 121 AAVLPGDSVAGLVVANGLINFLNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIF 180

Query: 399 RGLIPPLGGSLDFSPIL 449
           RG IPPLGG LD SPIL
Sbjct: 181 RGFIPPLGG-LDLSPIL 196

>gb|AAO13463.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 157

 Score =  117 bits (293), Expect = 4e-26
 Identities = 52/76 (68%), Positives = 65/76 (85%)
 Frame = +3

Query: 222 AIIPGDSTAELVLTNGLYNFLNLYNTALIVRLVLTWFPNPPEFLVTPLSTVCDPYLNLFR 401
           A + GDS A +V+++G+ NFL+LYNT L+VRLVLTWFPN P  +V PLST+CDPYLN+FR
Sbjct: 22  AAVLGDSVAGVVVSSGINNFLSLYNTVLVVRLVLTWFPNTPPAIVAPLSTICDPYLNIFR 81

Query: 402 GLIPPLGGSLDFSPIL 449
           G+IPPLGG+LD SPIL
Sbjct: 82  GIIPPLGGTLDLSPIL 97

>ref|NP_681324.1| ORF_ID:tsr0534~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22294255|dbj|BAC08086.1|
           ORF_ID:tsr0534~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 96

 Score = 73.6 bits (179), Expect = 6e-13
 Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
 Frame = +3

Query: 219 AAIIPGDSTAELVLTNGLYNFLNLYNTALIVRLVLTWFPN----PPEFLVTPLSTVCDPY 386
           AA++P       +L  G+ NFL +Y   L++R++L+WFPN     P F +  LS + DPY
Sbjct: 4   AAVLP-------ILLMGIANFLQIYLIILLIRVLLSWFPNINWYNPPFSI--LSQLTDPY 54

Query: 387 LNLFRGLIPPLGGSLDFSPIL 449
           LN+FRGLIPP+GG LDFSPI+
Sbjct: 55  LNIFRGLIPPIGG-LDFSPII 74

>ref|NP_194528.1| expressed protein [Arabidopsis thaliana] gi|7486950|pir||T02900
           hypothetical protein T13J8.100 - Arabidopsis thaliana
           gi|4455358|emb|CAB36768.1| putative protein [Arabidopsis
           thaliana] gi|7269653|emb|CAB79601.1| putative protein
           [Arabidopsis thaliana]
          Length = 218

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/73 (47%), Positives = 51/73 (68%), Gaps = 3/73 (4%)
 Frame = +3

Query: 240 STAELVLTNGLYNFLNLYNTALIVRLVLTWFPNPPEFLVTPLSTV---CDPYLNLFRGLI 410
           +T   V+  GL  +L++Y+  L+VR++L+WFPN P +   PLS +   CDPYLNLFR +I
Sbjct: 130 NTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIP-WDRQPLSAIRDLCDPYLNLFRNII 188

Query: 411 PPLGGSLDFSPIL 449
           PP+  +LD SP+L
Sbjct: 189 PPVFDTLDVSPLL 201

>gb|AAM64721.1| unknown [Arabidopsis thaliana]
          Length = 218

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 35/73 (47%), Positives = 51/73 (68%), Gaps = 3/73 (4%)
 Frame = +3

Query: 240 STAELVLTNGLYNFLNLYNTALIVRLVLTWFPNPPEFLVTPLSTV---CDPYLNLFRGLI 410
           +T   V+  GL  +L++Y+  L+VR++L+WFPN P +   PLS +   CDPYLNLFR +I
Sbjct: 130 NTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIP-WDGQPLSAIRDLCDPYLNLFRNII 188

Query: 411 PPLGGSLDFSPIL 449
           PP+  +LD SP+L
Sbjct: 189 PPVFDTLDVSPLL 201



EST assemble image


clone accession position
1 LC038b05_r AV621588 1 360
2 LC058b05_r AV623041 4 473
3 LC028e02_r AV620910 12 151
4 MX007a04_r BP086343 27 416
5 MXL047f02_r BP095802 27 323
6 LC041h06_r AV621861 27 402
7 LC042h05_r AV621939 28 402
8 MXL047d07_r BP095787 30 278




Chlamydomonas reinhardtii
Kazusa DNA Research Institute