KCC002867A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002867A_C01 KCC002867A_c01
aaaaggagcttcttacgggcctgcacgcgcccacgactggcgccatggacgaccggtggc
gcaacttcatgcacttccagATCACTCGCGCCCGGCAATACTTCACGGACGCCGAGGGCG
GCGTGGACCTGCTAGCACCGCAGGCTCGCTGGCCCGTCTGGTCGGCGCTGATCCTGTACC
GCCAGATCCTGGACGCCATTGAGGCGAACGACTACGACAACTTCTCCAAGCGCGCCTACG
TGCCCAAGTGGCGCAAGATGGTGTCGCTGCCCGTGGCCTACACCCGCGCGCTCATGCCCG
CACGCCGCCGGTAAATGGCGCTGGTCGTGGAGACCGCAGCAGCGGAAGCAGCGTGGCGGT
GGAGGGAGCGCGTCCTGCTGGCTTGGTGGCGGTGAAATTGCCGCAGCCTTGGAACAACTG
CAGCGGCCTTGGCGCCAGCTGCAGCAGCCAGGTCGTTTTGGTGGCCTTCTGACACCACCG
GCGGAGGCTGCATCATGTCATCTATCCACCACGCCTGCATCAGTGCTGCGGCGCTCCTGG
AAGGCGGGCGCCGCTTAGGTGGTTATCATTTGGGGCGGCTGCCAGCGCCTCTGCGTGACC
GCCGCTTGTACTTAAAGAGATAAGAGCCTTCGTCTTGGCAGCGCGAAGTTTATTGAGAGC
CGTGTTTTTAAGAGCGTGAGTGGAGCGAATGTGTTGCGCGAGCAGTTGAGCGTCGGAGCG
CTTGCGGCACGTGAAGGGTTGTGGGGCAGGCGGGGCCGGTCGCCCTGGCCCTGTGTGCTC
GGCTAGGCCATCCGGGTGGGTTGAACTCGTGTGACACCGCAGTGCCATAGCTGCCGTACG
TCGGGGGCTACAGCCATGTCGACGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002867A_C01 KCC002867A_c01
         (866 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK15621.1|AF305430_1 phytoene synthase [Haematococcus pluvia...   141  1e-32
pir||T10702 phytoene synthase (EC 2.5.1.-) - green alga (Dunalie...   138  1e-31
sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplast precursor gi|...   119  8e-26
ref|NP_485873.1| phytoene synthase [Nostoc sp. PCC 7120] gi|2536...   118  1e-25
sp|P49085|PSY_MAIZE Phytoene synthase, chloroplast precursor gi|...   115  9e-25

>gb|AAK15621.1|AF305430_1 phytoene synthase [Haematococcus pluvialis]
          Length = 389

 Score =  141 bits (356), Expect = 1e-32
 Identities = 67/102 (65%), Positives = 80/102 (77%)
 Frame = +3

Query: 3   KELLTGLHAPTTGAMDDRWRNFMHFQITRARQYFTDAEGGVDLLAPQARWPVWSALILYR 182
           +++L  +H P+ G + ++WR FM FQI RARQ F DAE GVD L  +ARWPVWSALILYR
Sbjct: 287 QDVLGAVHVPSQGKVSEKWRAFMKFQIARARQCFADAESGVDQLEAKARWPVWSALILYR 346

Query: 183 QILDAIEANDYDNFSKRAYVPKWRKMVSLPVAYTRALMPARR 308
           QILDAIE NDYDNFS+RAYV K +KM SLP+A TRAL+P  R
Sbjct: 347 QILDAIEKNDYDNFSQRAYVSKAKKMASLPLALTRALLPQHR 388

>pir||T10702 phytoene synthase (EC 2.5.1.-) - green alga (Dunaliella bardawil)
           gi|1916990|gb|AAB51287.1| phytoene synthase [Dunaliella
           bardawil]
          Length = 425

 Score =  138 bits (348), Expect = 1e-31
 Identities = 65/99 (65%), Positives = 78/99 (78%)
 Frame = +3

Query: 3   KELLTGLHAPTTGAMDDRWRNFMHFQITRARQYFTDAEGGVDLLAPQARWPVWSALILYR 182
           +E+   +H PT G +D+RWR+FM FQI RAR YF +AE GVD L  +ARWPVWSALILYR
Sbjct: 322 EEVKACIHRPTQGKVDERWRSFMKFQIKRARDYFQEAEDGVDCLDVKARWPVWSALILYR 381

Query: 183 QILDAIEANDYDNFSKRAYVPKWRKMVSLPVAYTRALMP 299
           QILD+IE NDYDNFS RAYVPK +K  SLP+A  RA++P
Sbjct: 382 QILDSIEKNDYDNFSMRAYVPKAKKFTSLPMALFRAMVP 420

>sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplast precursor gi|6002459|dbj|BAA84763.1|
           phytoene synthase [Daucus carota]
          Length = 398

 Score =  119 bits (297), Expect = 8e-26
 Identities = 55/85 (64%), Positives = 71/85 (82%)
 Frame = +3

Query: 39  GAMDDRWRNFMHFQITRARQYFTDAEGGVDLLAPQARWPVWSALILYRQILDAIEANDYD 218
           G + D+WR+FM  QI RAR +F +AE GV  L+  +RWPVW++L+LY+QILDAIEANDYD
Sbjct: 307 GKVTDKWRSFMKGQIKRARMFFDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYD 366

Query: 219 NFSKRAYVPKWRKMVSLPVAYTRAL 293
           NF+KRAYV K +K+VSLP+AY+RAL
Sbjct: 367 NFTKRAYVGKAKKLVSLPLAYSRAL 391

>ref|NP_485873.1| phytoene synthase [Nostoc sp. PCC 7120] gi|25366683|pir||AC2035
           phytoene synthase [imported] - Nostoc sp. (strain PCC
           7120) gi|17130923|dbj|BAB73532.1| phytoene synthase
           [Nostoc sp. PCC 7120]
          Length = 310

 Score =  118 bits (296), Expect = 1e-25
 Identities = 51/84 (60%), Positives = 68/84 (80%)
 Frame = +3

Query: 39  GAMDDRWRNFMHFQITRARQYFTDAEGGVDLLAPQARWPVWSALILYRQILDAIEANDYD 218
           G +D+RWR+ M FQI RARQ++ +AE G+  LAP ARWPVW+A +LY QILD IE NDYD
Sbjct: 224 GVVDERWRSLMRFQIERARQFYAEAEKGITHLAPDARWPVWAASMLYGQILDVIERNDYD 283

Query: 219 NFSKRAYVPKWRKMVSLPVAYTRA 290
            FS+RAYVP+W+K+ +LP+A+ R+
Sbjct: 284 VFSQRAYVPQWKKLRTLPIAWMRS 307

>sp|P49085|PSY_MAIZE Phytoene synthase, chloroplast precursor gi|2130144|pir||S68307
           phytoene synthase - maize gi|1098665|gb|AAB60314.1|
           phytoene synthase
          Length = 410

 Score =  115 bits (288), Expect = 9e-25
 Identities = 52/86 (60%), Positives = 71/86 (82%)
 Frame = +3

Query: 39  GAMDDRWRNFMHFQITRARQYFTDAEGGVDLLAPQARWPVWSALILYRQILDAIEANDYD 218
           G + +RWRNFM  QI RAR +F +AE GV+ L+  +RWPVW++L+LYRQILD IEANDY+
Sbjct: 315 GVVTNRWRNFMKRQIKRARMFFEEAERGVNELSQASRWPVWASLLLYRQILDEIEANDYN 374

Query: 219 NFSKRAYVPKWRKMVSLPVAYTRALM 296
           NF+KRAYV K +K+++LPVAY ++L+
Sbjct: 375 NFTKRAYVGKGKKLLALPVAYGKSLL 400



EST assemble image


clone accession position
1 LCL012b09_r AV626604 1 524
2 LC028c05_r AV620894 101 593
3 LC091d12_r AV625358 412 866




Chlamydomonas reinhardtii
Kazusa DNA Research Institute