KCC002866A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002866A_C01 KCC002866A_c01
caaggcgcgggttgctgcgggtggcgaggacgcggacaaggacgaggacgtggcggacct
gcaggagctgtaccgcgctgCCAAGAAGCGGTTCGACGAGGAGGAGGAGTTTAAGACCCG
CGCCCGCGAGGCCGTGACCCGCCTGCAGAGCGGCGACGCCACCAGCCTGGCCTCGTGGCA
GCGCATCTGCGCCGCCTCCCGCCGCGAGTTCGAGGCGCTGTACACCCGCCTGGGCGTCAC
GCTGCAGGAGCGCGGCGAGAGCTTCTACAACCCCATGCTCAAGGGCATCGTGGACGGACT
GAAGGAGACTGGCGTGGCCACCATTGACGACGGCGCCACGTGCGTGTTCGTGGAGGGACA
GTCCGTGCCGCTGATTGTGCAGAAGAGCGACGGTGGTTTTGGCTACGCCTCCACGGACAT
GGCGGCACTGCACCACCGCCTGAACGAGGAGAAGGCGGACTGGATCATCTACGTCACAGA
CGTGGGCCAGTCTCAGCACTTTGAGCTGGTGTTTGGTGCGGCCAAGAAGGCGGGCTGGCT
CAAGGAGGCCGCCGGGCCCAAGGTGTCACACGTGGGCTTCGGCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002866A_C01 KCC002866A_c01
         (585 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica ...   206  2e-52
ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana] ...   205  3e-52
emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]        205  3e-52
emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]        204  7e-52
ref|NP_194360.1| arginyl-tRNA synthetase [Arabidopsis thaliana] ...   204  7e-52

>dbj|BAA96752.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
           gi|9757672|dbj|BAB08191.1| Similar to Arabidopsis
           thaliana arginine--tRNA ligase (T06014) [Oryza sativa
           (japonica cultivar-group)]
          Length = 605

 Score =  206 bits (524), Expect = 2e-52
 Identities = 103/184 (55%), Positives = 131/184 (70%), Gaps = 3/184 (1%)
 Frame = +2

Query: 41  DEDVADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRREFEAL 220
           ++ V DLQ  Y+A+KKRFD++ +FK RAR+AV RLQ G+    A+W++IC  SR EF+ +
Sbjct: 213 NQAVGDLQSFYKASKKRFDDDPDFKERARQAVVRLQGGEDKYRAAWKKICQISRMEFDLV 272

Query: 221 YTRLGVTLQERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKSDGGF 400
           Y RL V L+E+GESFYNP +  +++ L   G+     GA  +FVE    PLIV K DGGF
Sbjct: 273 YKRLNVKLEEKGESFYNPYIPPVLEELTNKGLIVESKGARVIFVEDH--PLIVIKQDGGF 330

Query: 401 GYASTDMAALHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWLKEAAG---PKVSH 571
            YASTD+AAL +RLN EKA+WIIYVTDVGQ +HF ++F AAK AGWL E  G   PK SH
Sbjct: 331 NYASTDLAALWYRLNVEKAEWIIYVTDVGQQRHFHMLFTAAKMAGWLPEQNGKKYPKASH 390

Query: 572 VGFG 583
           VGFG
Sbjct: 391 VGFG 394

>ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|25293281|pir||A96691 arginyl-tRNA synthetase
           [imported] - Arabidopsis thaliana
           gi|12322268|gb|AAG51163.1|AC074025_13 arginyl-tRNA
           synthetase [Arabidopsis thaliana]
           gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14
           [Arabidopsis thaliana] gi|20334712|gb|AAM16217.1|
           At1g66530/F28G11_14 [Arabidopsis thaliana]
          Length = 590

 Score =  205 bits (522), Expect = 3e-52
 Identities = 98/180 (54%), Positives = 126/180 (69%), Gaps = 2/180 (1%)
 Frame = +2

Query: 50  VADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRREFEALYTR 229
           + DLQ  YR +K +FD   EFK +A++AV RLQ GD     +W +IC  SR EF  +Y R
Sbjct: 204 IGDLQVFYRESKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKR 263

Query: 230 LGVTLQERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKSDGGFGYA 409
           L + L+E+GESFYNP +  +++ L   G+     GA  +F+EG  +PLIV KSDGGF YA
Sbjct: 264 LRIELEEKGESFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKIPLIVVKSDGGFNYA 323

Query: 410 STDMAALHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWL--KEAAGPKVSHVGFG 583
           STD+ AL +RLNEEKA+WIIYVTDVGQ QHF++ F AA+KAGWL   +   P+VSHVGFG
Sbjct: 324 STDLTALWYRLNEEKAEWIIYVTDVGQQQHFDMFFKAARKAGWLPDDDKTYPRVSHVGFG 383

>emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 589

 Score =  205 bits (522), Expect = 3e-52
 Identities = 98/180 (54%), Positives = 126/180 (69%), Gaps = 2/180 (1%)
 Frame = +2

Query: 50  VADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRREFEALYTR 229
           + DLQ  YR +K +FD   EFK +A++AV RLQ GD     +W +IC  SR EF  +Y R
Sbjct: 204 IGDLQVFYRESKLKFDLNPEFKEKAQQAVVRLQGGDPVYRQAWAKICEISRNEFAKVYKR 263

Query: 230 LGVTLQERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKSDGGFGYA 409
           L + L+E+GESFYNP +  +++ L   G+     GA  +F+EG  +PLIV KSDGGF YA
Sbjct: 264 LRIELEEKGESFYNPYIANVIEELSSKGLVEESKGARVIFIEGFKIPLIVVKSDGGFNYA 323

Query: 410 STDMAALHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWL--KEAAGPKVSHVGFG 583
           STD+ AL +RLNEEKA+WIIYVTDVGQ QHF++ F AA+KAGWL   +   P+VSHVGFG
Sbjct: 324 STDLTALWYRLNEEKAEWIIYVTDVGQQQHFDMFFKAARKAGWLPDDDKTYPRVSHVGFG 383

>emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 590

 Score =  204 bits (519), Expect = 7e-52
 Identities = 98/187 (52%), Positives = 131/187 (69%), Gaps = 2/187 (1%)
 Frame = +2

Query: 29  DADKDEDVADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRRE 208
           D+  +  + DLQ  Y+A+K +FD +E FK +A++AV RLQ GD     +W +IC  SR E
Sbjct: 197 DSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQGGDPVYRKAWAKICDISRTE 256

Query: 209 FEALYTRLGVTLQERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKS 388
           F  +Y RL V L+E+GESFYNP +  +++ L   G+    +GA  +F+EG  +PL+V KS
Sbjct: 257 FAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKS 316

Query: 389 DGGFGYASTDMAALHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWL--KEAAGPK 562
           DGGF YASTD+ AL +RLNEEKA+WIIYVTDVGQ QHF + F AA+KAGWL   +   P+
Sbjct: 317 DGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPR 376

Query: 563 VSHVGFG 583
           V+HVGFG
Sbjct: 377 VNHVGFG 383

>ref|NP_194360.1| arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|7437759|pir||T06014 arginine-tRNA ligase (EC
           6.1.1.19) - Arabidopsis thaliana
           gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase
           [Arabidopsis thaliana] gi|4539426|emb|CAB38959.1|
           arginyl-tRNA synthetase [Arabidopsis thaliana]
           gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase
           [Arabidopsis thaliana]
          Length = 642

 Score =  204 bits (519), Expect = 7e-52
 Identities = 98/187 (52%), Positives = 131/187 (69%), Gaps = 2/187 (1%)
 Frame = +2

Query: 29  DADKDEDVADLQELYRAAKKRFDEEEEFKTRAREAVTRLQSGDATSLASWQRICAASRRE 208
           D+  +  + DLQ  Y+A+K +FD +E FK +A++AV RLQ GD     +W +IC  SR E
Sbjct: 249 DSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQGGDPVYRKAWAKICDISRTE 308

Query: 209 FEALYTRLGVTLQERGESFYNPMLKGIVDGLKETGVATIDDGATCVFVEGQSVPLIVQKS 388
           F  +Y RL V L+E+GESFYNP +  +++ L   G+    +GA  +F+EG  +PL+V KS
Sbjct: 309 FAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKS 368

Query: 389 DGGFGYASTDMAALHHRLNEEKADWIIYVTDVGQSQHFELVFGAAKKAGWL--KEAAGPK 562
           DGGF YASTD+ AL +RLNEEKA+WIIYVTDVGQ QHF + F AA+KAGWL   +   P+
Sbjct: 369 DGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPR 428

Query: 563 VSHVGFG 583
           V+HVGFG
Sbjct: 429 VNHVGFG 435



EST assemble image


clone accession position
1 LCL008b07_r AV626380 1 476
2 LC027h02_r AV620864 100 585




Chlamydomonas reinhardtii
Kazusa DNA Research Institute