KCC002864A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002864A_C01 KCC002864A_c01
aggtcacagtgacacctacaatctgatttCGCGCCATCCATAAGAAGAAACAGCATTGCA
GACGCGTTTCCCAACGGCGCTCGTTTAGTGTAGGCCATGCGCTCCCTCGCGACGCCCGGC
CGCAGTGGGCGCATGCACCATGACTTGGTCTGCCGCTCCCGATCGAGAATTAGGCCATGC
GTTGCACTGCACGCGTCGGCCAGTGGCGCGCCAGGGCCATCCGGCGGGAACTCGGGTTTG
CCTATCATTCGTGCCATGAAGCTGCCGAACCAAGCAGATAGTGTATTCAACCCAAAGGAC
AGCAGGGACCTCCGGAGTGCCGTGCTGGATGCACCGACGAAGAGCGTTTCGGACCTGGAC
TACCTCTCGGAACTGCTGGCCATCCAGCAAAGCGATGGCCCTAAAAACCTCGGATTCTTC
GGGACTCGCAACATGGGTGTCACACACCAAAAGCTCGTGGAGATCCTCGCGTACGCATAC
GCATCCACGGGCAACCACATCTTCACCTCGGGCGCCACGGGAACCAACGCGGCCGTGATC
AAGGGCGCCCTGCGCGCCAACTGCCCGGACAAGCTGACGGTGCTGCTGCCGCAGAGCCTC
AGCAAGCAGCCCTACGAGTCGCAGGAGCTCTTATCGCAGGTGGCCAACCTGCAGGAGATG
CCGCAGAACGACCACCTGCCGCTCATGGAGGCGTCCAGGATCTGCAACCGCAAGATCATC
TCGCACATTCAGCAGGTGGTGTGCTTCGCCTTCCACGACAGTCGGTTACTGCTCGAAACC
TGCCAGGAGGCCAAGGAGATGAAGAAGATCGTGACGCTCTTCTACCTCGACTAGTCCCTC
GGCGCGGCGAGTCCCTTAGGCGAGGCAGGCCATGCAAGTGGGTGTGTAATGGCCGTGCCA
ATCCCTCACACGTGGGGCAATTGTTTCCGCCGCGTCTCTCGTGGTAGAGCCTGTAACCAT
TATGAGACGGAAAGGCGGCGCCAGCACCGCGCCGCCGCTTGTACCATGATTTTATGTGTG
TCCATTTGGCCTGTCTGGGACTGTCCCCTCTGTAACATCCGCATCCATTTGGCCGCCTCA
TGCGGGCGGCGAATAAGGTGAGGTGGCGTTGCGCAGCACTTCTACCTGGGTCTCTGCCGT
TGGTGTTGGCTGGGCGCGCATGAGACCACTGTGCGATGAGACTAGAATCGTGCGGCGTGC
TGTCCATGCGCGCTATCGGGCATCCGCGTACTGTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002864A_C01 KCC002864A_c01
         (1236 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850404.1| predicted protein [Arabidopsis thaliana]             242  9e-63
gb|AAM61639.1| unknown [Arabidopsis thaliana]                         237  3e-61
ref|NP_191546.1| expressed protein [Arabidopsis thaliana] gi|113...   236  6e-61
pir||T00674 hypothetical protein At2g43940 [imported] - Arabidop...   202  8e-51
ref|NP_441901.1| unknown protein [Synechocystis sp. PCC 6803] gi...   181  2e-44

>ref|NP_850404.1| predicted protein [Arabidopsis thaliana]
          Length = 289

 Score =  242 bits (618), Expect = 9e-63
 Identities = 121/192 (63%), Positives = 151/192 (78%)
 Frame = +1

Query: 256 MKLPNQADSVFNPKDSRDLRSAVLDAPTKSVSDLDYLSELLAIQQSDGPKNLGFFGTRNM 435
           +++P QA ++     S      V  +  K  +D+DY+ ELLAIQQ  GP+++GFFGTRNM
Sbjct: 105 LRIPTQAQAIVEGSGS------VAVSELKPAADVDYIQELLAIQQQ-GPRSIGFFGTRNM 157

Query: 436 GVTHQKLVEILAYAYASTGNHIFTSGATGTNAAVIKGALRANCPDKLTVLLPQSLSKQPY 615
           G  HQ+L+EIL+YA   T NHI+TSGA+GTNAAVI+GALRA  P+ LTV+LPQSL KQP 
Sbjct: 158 GFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPP 217

Query: 616 ESQELLSQVANLQEMPQNDHLPLMEASRICNRKIISHIQQVVCFAFHDSRLLLETCQEAK 795
           ESQELLS+V N+ E P NDHLPL+EASR+CN  IIS +QQV+CFAFHDS+LL+ETCQEAK
Sbjct: 218 ESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQQVICFAFHDSKLLMETCQEAK 277

Query: 796 EMKKIVTLFYLD 831
            ++KIVTLFYLD
Sbjct: 278 NLRKIVTLFYLD 289

>gb|AAM61639.1| unknown [Arabidopsis thaliana]
          Length = 288

 Score =  237 bits (605), Expect = 3e-61
 Identities = 118/192 (61%), Positives = 149/192 (77%)
 Frame = +1

Query: 256 MKLPNQADSVFNPKDSRDLRSAVLDAPTKSVSDLDYLSELLAIQQSDGPKNLGFFGTRNM 435
           +++P QA ++     S  +      +  + V D+DY+ ELLAIQQ  GP+ +GFFGTRNM
Sbjct: 104 LRIPTQAQAIVEGPGSLAV------SELQRVPDVDYIQELLAIQQQ-GPRTIGFFGTRNM 156

Query: 436 GVTHQKLVEILAYAYASTGNHIFTSGATGTNAAVIKGALRANCPDKLTVLLPQSLSKQPY 615
           G  HQ+L++IL+YA   T NHI+TSGA GTNAAVI+GALRA  P+ LTV+LPQSL KQP 
Sbjct: 157 GFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPP 216

Query: 616 ESQELLSQVANLQEMPQNDHLPLMEASRICNRKIISHIQQVVCFAFHDSRLLLETCQEAK 795
           ESQELLS+V N+ E P NDHLPL+EASR+CN  IIS +QQ++CFAFHDS+LL+ETCQEAK
Sbjct: 217 ESQELLSKVQNVIEKPHNDHLPLLEASRLCNMDIISQVQQIICFAFHDSKLLMETCQEAK 276

Query: 796 EMKKIVTLFYLD 831
            ++KIVTLFYLD
Sbjct: 277 NLRKIVTLFYLD 288

>ref|NP_191546.1| expressed protein [Arabidopsis thaliana] gi|11357602|pir||T47811
           hypothetical protein F24G16.140 - Arabidopsis thaliana
           gi|7019681|emb|CAB75806.1| putative protein [Arabidopsis
           thaliana]
          Length = 288

 Score =  236 bits (602), Expect = 6e-61
 Identities = 117/192 (60%), Positives = 149/192 (76%)
 Frame = +1

Query: 256 MKLPNQADSVFNPKDSRDLRSAVLDAPTKSVSDLDYLSELLAIQQSDGPKNLGFFGTRNM 435
           +++P QA ++     S  +      +  + V D+DY+ ELLAIQQ  GP+ +GFFGTRNM
Sbjct: 104 LRIPTQAQAIVEGPGSLAV------SELQRVPDVDYIQELLAIQQQ-GPRTIGFFGTRNM 156

Query: 436 GVTHQKLVEILAYAYASTGNHIFTSGATGTNAAVIKGALRANCPDKLTVLLPQSLSKQPY 615
           G  HQ+L++IL+YA   T NHI+TSGA GTNAAVI+GALRA  P+ LTV+LPQSL KQP 
Sbjct: 157 GFMHQELIQILSYAMVITKNHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPP 216

Query: 616 ESQELLSQVANLQEMPQNDHLPLMEASRICNRKIISHIQQVVCFAFHDSRLLLETCQEAK 795
           ESQELLS+V N+ E P NDHLPL+EASR+CN  IIS +QQ++CFAFHDS+LL+ETCQEA+
Sbjct: 217 ESQELLSKVQNVIEKPHNDHLPLLEASRLCNMDIISQVQQIICFAFHDSKLLMETCQEAR 276

Query: 796 EMKKIVTLFYLD 831
            ++KIVTLFYLD
Sbjct: 277 NLRKIVTLFYLD 288

>pir||T00674 hypothetical protein At2g43940 [imported] - Arabidopsis thaliana
           gi|3212851|gb|AAC23402.1| unknown protein [Arabidopsis
           thaliana]
          Length = 383

 Score =  202 bits (515), Expect = 8e-51
 Identities = 102/168 (60%), Positives = 128/168 (75%)
 Frame = +1

Query: 256 MKLPNQADSVFNPKDSRDLRSAVLDAPTKSVSDLDYLSELLAIQQSDGPKNLGFFGTRNM 435
           +++P QA ++     S      V  +  K  +D+DY+ ELLAIQQ  GP+++GFFGTRNM
Sbjct: 105 LRIPTQAQAIVEGSGS------VAVSELKPAADVDYIQELLAIQQQ-GPRSIGFFGTRNM 157

Query: 436 GVTHQKLVEILAYAYASTGNHIFTSGATGTNAAVIKGALRANCPDKLTVLLPQSLSKQPY 615
           G  HQ+L+EIL+YA   T NHI+TSGA+GTNAAVI+GALRA  P+ LTV+LPQSL KQP 
Sbjct: 158 GFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPP 217

Query: 616 ESQELLSQVANLQEMPQNDHLPLMEASRICNRKIISHIQQVVCFAFHD 759
           ESQELLS+V N+ E P NDHLPL+EASR+CN  IIS +QQV+CFAFHD
Sbjct: 218 ESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQQVICFAFHD 265

>ref|NP_441901.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469581|pir||S76450
           hypothetical protein - Synechocystis sp. (strain PCC
           6803) gi|1653667|dbj|BAA18579.1| ORF_ID:slr1926~unknown
           protein [Synechocystis sp. PCC 6803]
          Length = 223

 Score =  181 bits (460), Expect = 2e-44
 Identities = 93/172 (54%), Positives = 126/172 (73%)
 Frame = +1

Query: 316 SAVLDAPTKSVSDLDYLSELLAIQQSDGPKNLGFFGTRNMGVTHQKLVEILAYAYASTGN 495
           S V++ PT     LD L++ LA  Q  G K +   G+R++ +THQ+L+E+++YA    GN
Sbjct: 58  SQVVNIPT-----LDTLAQELAAIQQTGSKRIALLGSRHVPITHQQLIEMMSYALVLGGN 112

Query: 496 HIFTSGATGTNAAVIKGALRANCPDKLTVLLPQSLSKQPYESQELLSQVANLQEMPQNDH 675
           H+ TSGATGTN+AVIKGA+RA+ P+ LTV+LPQSL +QP ES+  L QV +L E  +ND 
Sbjct: 113 HLVTSGATGTNSAVIKGAMRAD-PNLLTVILPQSLDRQPRESRNQLGQVVHLVENTENDS 171

Query: 676 LPLMEASRICNRKIISHIQQVVCFAFHDSRLLLETCQEAKEMKKIVTLFYLD 831
           L L EAS ICNR+I+S  QQ++CFAFH+S  LL+TC EA+E +K+VTLFY D
Sbjct: 172 LSLGEASTICNREIVSRCQQLICFAFHESHTLLQTCAEAEEQRKLVTLFYFD 223



EST assemble image


clone accession position
1 MX230f03_r BP090891 1 295
2 LCL071g08_r AV630039 30 340
3 LC056d10_r AV622909 153 643
4 MXL092d12_r BP098378 183 685
5 LCL082b11_r AV630655 292 733
6 LC041h11_r AV621866 615 1133
7 LC027c10_r AV620822 744 1236




Chlamydomonas reinhardtii
Kazusa DNA Research Institute