KCC002862A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002862A_C01 KCC002862A_c01
gAAGTGATCCAGAAGTACCGAAAATGGCTAGCTCGTGGAAAGTCGTGGTGAATTGGCTCC
TTCCCCCGCCCCTCATCCTCACGATTTTGCTCATGCTGCCGGTGCCACAGGTCGTGACGG
AAGGGCCTGCTGGCATTCACACGGCAGTTCCTGTTCATGAAGCTCGCGGGCCAGGTTCTG
CTGGTTCATGTGGCGCTGGTGATCACGGGCGCAGCCTTTACAGTGAGCAGCATGCACACC
TACCACATCTCTCGGACGCCGCTCCCGGACACTCTCACGCCCAACCAGAGGACGGCTATC
CTCGCCAAGCGGTGGCGCGAGGAGCGGAACTTCTGGATTGCGACGCTCACCTTCCTTCTT
TGGGGATTGCTGTACCGGTTCTACGCACTGGCTATCGACCACGTGGCTCTGCGGGACCGC
GTCCGGCAGCTGGAACTGGCAGCTGTGGGCGCGACGCGCGGCAGCACAGTAACAGGCAGC
CGGGCGCCTGCCAGCAGCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002862A_C01 KCC002862A_c01
         (501 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH25818.1| Tenc1 protein [Mus musculus]                            42  0.006
ref|NP_663478.1| putative tumor suppressor LAPSER1 [Mus musculus...    41  0.009
dbj|BAC98256.1| mKIAA1813 protein [Mus musculus]                       41  0.009
emb|CAD39005.1| hypothetical protein [Homo sapiens]                    40  0.012
gb|AAH58938.1| Unknown (protein for MGC:65190) [Homo sapiens]          40  0.012

>gb|AAH25818.1| Tenc1 protein [Mus musculus]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 41/128 (32%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
 Frame = +3

Query: 105 PQVVTEGPAGIHTAVPVHEARGPGSAGSCGAGDHGRSLYSEQHAHLPHLSDAAPGHS-HA 281
           P +VT G  G   AVP +      +  SCG+   GR  Y    AH P     +PG   + 
Sbjct: 32  PALVTYGYGG---AVPSYCPAYGRAPHSCGSPSEGRG-YPSPGAHSPRAGSVSPGSPPYL 87

Query: 282 QPED-GYPRQAVARGAELLDCDAHLPSLGIAVPVLRTGYRPRGSAGPRPAAGTGSCGRDA 458
           QP   GY   A   G +      HL S G   P+  T   P  S  P P+   GS G   
Sbjct: 88  QPRKLGYEISA-EDGRDKYPLSGHLASTG---PLASTELFPPVSESPEPSWRDGSSGHST 143

Query: 459 RQHSNRQP 482
              S R P
Sbjct: 144 LPRSPRDP 151

>ref|NP_663478.1| putative tumor suppressor LAPSER1 [Mus musculus]
           gi|15928425|gb|AAH14695.1| Putative tumor suppressor
           LAPSER1 [Mus musculus]
          Length = 671

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 44/147 (29%), Positives = 56/147 (37%), Gaps = 10/147 (6%)
 Frame = -3

Query: 475 LLLCCRASRPQLPVPAAGR---GPAEPRGR*PVRRTGTAIPKEGR*ASQSRSSAPRATAW 305
           +L+   A +P LP P       G   PR        G+     G  AS S SS+  + A 
Sbjct: 141 ILIRPTAFKPVLPKPRGAPSLPGFLGPRAAGLSGSQGSLTQLFGGPASSSSSSSSSSAAD 200

Query: 304 RG*PSSGWA*ECPGAASERCGRCACCSL*RLRP*-------SPAPHEPAEPGPRAS*TGT 146
           +    SGWA  CP       GR +  SL             SP  H P+    R +  G 
Sbjct: 201 KPLALSGWASGCPSGTLSDSGRNSLSSLPTYSTGGAEPTTNSPGGHLPSHGPGRGALPGP 260

Query: 145 AV*MPAGPSVTTCGTGSMSKIVRMRGG 65
           A  +P GPS +  G  S SK     GG
Sbjct: 261 ARGVPTGPSHSDSGRSSSSKSTGSLGG 287

>dbj|BAC98256.1| mKIAA1813 protein [Mus musculus]
          Length = 675

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 44/147 (29%), Positives = 56/147 (37%), Gaps = 10/147 (6%)
 Frame = -3

Query: 475 LLLCCRASRPQLPVPAAGR---GPAEPRGR*PVRRTGTAIPKEGR*ASQSRSSAPRATAW 305
           +L+   A +P LP P       G   PR        G+     G  AS S SS+  + A 
Sbjct: 145 ILIRPTAFKPVLPKPRGAPSLPGFLGPRAAGLSGSQGSLTQLFGGPASSSSSSSSSSAAD 204

Query: 304 RG*PSSGWA*ECPGAASERCGRCACCSL*RLRP*-------SPAPHEPAEPGPRAS*TGT 146
           +    SGWA  CP       GR +  SL             SP  H P+    R +  G 
Sbjct: 205 KPLALSGWASGCPSGTLSDSGRNSLSSLPTYSTGGAEPTTNSPGGHLPSHGPGRGALPGP 264

Query: 145 AV*MPAGPSVTTCGTGSMSKIVRMRGG 65
           A  +P GPS +  G  S SK     GG
Sbjct: 265 ARGVPTGPSHSDSGRSSSSKSTGSLGG 291

>emb|CAD39005.1| hypothetical protein [Homo sapiens]
          Length = 531

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
 Frame = -3

Query: 475 LLLCCRASRPQLPVPAAGRGPAE---PRGR*PVRRTGTAIPKEGR*ASQSRSSAPRATAW 305
           +L+   A +P LP P           PR        G+     G  AS S SS+  + A 
Sbjct: 3   ILIRPTAFKPVLPKPRGAPSLPSFMGPRATGLSGSQGSLTQLFGGPASSSSSSSSSSAAD 62

Query: 304 RG*PSSGWA*ECPGAASERCGRCACCSL*RLRP*-------SPAPHEPAEPGPRAS*TGT 146
           +    SGWA  CP       GR +  SL             SP  H P+    R +  G 
Sbjct: 63  KPLAFSGWASGCPSGTLSDSGRNSLSSLPTYSTGGAEPTTSSPGGHLPSHGSGRGALPGP 122

Query: 145 AV*MPAGPSVTTCGTGSMSKIVRMRGG 65
           A  +P GPS +  G  S SK     GG
Sbjct: 123 ARGVPTGPSHSDSGRSSSSKSTGSLGG 149

>gb|AAH58938.1| Unknown (protein for MGC:65190) [Homo sapiens]
          Length = 669

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 10/147 (6%)
 Frame = -3

Query: 475 LLLCCRASRPQLPVPAAGRGPAE---PRGR*PVRRTGTAIPKEGR*ASQSRSSAPRATAW 305
           +L+   A +P LP P           PR        G+     G  AS S SS+  + A 
Sbjct: 141 ILIRPTAFKPVLPKPRGAPSLPSFMGPRATGLSGSQGSLTQLFGGPASSSSSSSSSSAAD 200

Query: 304 RG*PSSGWA*ECPGAASERCGRCACCSL*RLRP*-------SPAPHEPAEPGPRAS*TGT 146
           +    SGWA  CP       GR +  SL             SP  H P+    R +  G 
Sbjct: 201 KPLAFSGWASGCPSGTLSDSGRNSLSSLPTYSTGGAEPTTSSPGGHLPSHGSGRGALPGP 260

Query: 145 AV*MPAGPSVTTCGTGSMSKIVRMRGG 65
           A  +P GPS +  G  S SK     GG
Sbjct: 261 ARGVPTGPSHSDSGRSSSSKSTGSLGG 287



EST assemble image


clone accession position
1 LC031b10_r AV621097 1 424
2 LC027a06_r AV620799 107 626
3 LCL039g08_r AV628302 113 602




Chlamydomonas reinhardtii
Kazusa DNA Research Institute