KCC002861A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002861A_C01 KCC002861A_c01
tagccccctcgatagatacagtcagtgaaagatggtgCTCTCCTTCGGGCTCACATACTA
TGTGTGCATCTTTGCGGAGCTCCTTTTCCCTACTTATGCGTCATTGAAAGCGATTCAGTC
GCCCGGCAAGCTTGACGATACCCAGTGGTTGACTTACTGGGTTGTATACGCGTTCATTTC
GACTTTCGAGAGCGTCGGCAGCATTATTCTGCAGTGGATTCCTCTGTACTACGAGATTAA
GCTGCTGTTCGTGCTGTGGATGATTGCTCCCCAGACCCAGGGCGCCCGCAAGATCTACGA
GGACCACATCATGCCGCTGTTGAAGAAGTACGGCGACAAGATCGACCCCGTCTTCGCCCG
CGCCGAGCAGGCCCTGGAGAGCCAGTACGTGAACCACCTGGCCAAGTATGTGGACAAGCA
CGGCCCGGCCGTCCTCGACCAGGCCCTGGCCCAGGCCCAGAAGCACGGCACCGTGGTGGC
GGGCATGGCGCAGGCCGCGTACCAGGAGCAGCTGAAGAAGGCGGCCAGCGGCCAGCCCGG
TGCCGCGGCCTTTAGCGGCGCCCACTAAGCGCCGACTGGACTGTGGGGGTTTCCGTGTGG
GGTTTCCGTGAGCTAGCTGCTGGTCCAGTGTAGACGGAGACCATGTGGTTGTTGTCCGGC
AGGAGCTAAGGGGATCAGTGACTTGTCAGTTGTTGTGACATACCCAGCGTGCGGAGTGCT
GTCGAAATGCGAACGCGAATGTGCGCGACACGAAGAGAAGTTGTAGTCGCTAGCACGCAT
AGAAGGCCGGTTAGCAGGAGGCGGTCACAGCAGACATGTTACCTCATCCAGACGGTAAAC
GCCACGGGCAATAGAGGAGCGCCGCCGACCCATCACTGATATAACCAGGTTGCGATGGCT
AGGCtgtcggacggctggcgggctggcgcggagcggagctgcggggcgcgcggcatccga
aaccaacctggaaaacaccagcgc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002861A_C01 KCC002861A_c01
         (984 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A48892 abscisic acid-induced protein HVA22 - barley gi|4045...    99  8e-20
dbj|BAC80265.1| hypothetical protein [Triticum aestivum]               98  2e-19
ref|NP_568744.1| expressed protein [Arabidopsis thaliana] gi|993...    98  2e-19
dbj|BAA96985.1| gene_id:MFB16.12~pir||T05517~similar to unknown ...    98  2e-19
pir||T05517 abscisic acid-induced protein homolog F13M23.100 - A...    95  2e-18

>pir||A48892 abscisic acid-induced protein HVA22 - barley
           gi|404589|gb|AAA16094.1| A22
          Length = 130

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 42/84 (50%), Positives = 60/84 (71%)
 Frame = +2

Query: 80  LLFPTYASLKAIQSPGKLDDTQWLTYWVVYAFISTFESVGSIILQWIPLYYEIKLLFVLW 259
           LL+P YAS+ A++SP K+DD QWL YW++Y+FI+  E V   +L WIP++Y +KLLFV W
Sbjct: 21  LLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLLEMVAEPVLYWIPVWYPVKLLFVAW 80

Query: 260 MIAPQTQGARKIYEDHIMPLLKKY 331
           +  PQ +GA  IY+  +   L+KY
Sbjct: 81  LALPQFKGASFIYDKVVREQLRKY 104

>dbj|BAC80265.1| hypothetical protein [Triticum aestivum]
          Length = 130

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 41/84 (48%), Positives = 60/84 (70%)
 Frame = +2

Query: 80  LLFPTYASLKAIQSPGKLDDTQWLTYWVVYAFISTFESVGSIILQWIPLYYEIKLLFVLW 259
           LL+P YAS+ A++SP K+DD QWL YW++Y+FI+  E +   +L WIP++Y +KLLFV W
Sbjct: 21  LLYPLYASVCAMESPSKVDDEQWLAYWILYSFITLMEMLAEPVLYWIPVWYPVKLLFVAW 80

Query: 260 MIAPQTQGARKIYEDHIMPLLKKY 331
           +  PQ +GA  IY+  +   L+KY
Sbjct: 81  LALPQFKGASFIYDKVVREQLRKY 104

>ref|NP_568744.1| expressed protein [Arabidopsis thaliana]
           gi|9931544|gb|AAG02213.1|AF290892_1 AtHVA22e
           [Arabidopsis thaliana]
           gi|11225589|gb|AAG33060.1|AF313484_1 AtHVA22e
           [Arabidopsis thaliana] gi|21537153|gb|AAM61494.1|
           abscisic acid-induced-like protein [Arabidopsis
           thaliana]
          Length = 116

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 41/85 (48%), Positives = 60/85 (70%)
 Frame = +2

Query: 80  LLFPTYASLKAIQSPGKLDDTQWLTYWVVYAFISTFESVGSIILQWIPLYYEIKLLFVLW 259
           LL+P YAS+ AI+SP K+DD QWL YW++Y+F++  E +   +L+WIP++Y  KL+FV W
Sbjct: 21  LLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTAKLVFVAW 80

Query: 260 MIAPQTQGARKIYEDHIMPLLKKYG 334
           ++ PQ +GA  IY   +    KKYG
Sbjct: 81  LVLPQFRGAAFIYNKVVREQFKKYG 105

>dbj|BAA96985.1| gene_id:MFB16.12~pir||T05517~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 107

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 41/85 (48%), Positives = 60/85 (70%)
 Frame = +2

Query: 80  LLFPTYASLKAIQSPGKLDDTQWLTYWVVYAFISTFESVGSIILQWIPLYYEIKLLFVLW 259
           LL+P YAS+ AI+SP K+DD QWL YW++Y+F++  E +   +L+WIP++Y  KL+FV W
Sbjct: 2   LLYPLYASVIAIESPSKVDDEQWLAYWILYSFLTLSELILQSLLEWIPIWYTAKLVFVAW 61

Query: 260 MIAPQTQGARKIYEDHIMPLLKKYG 334
           ++ PQ +GA  IY   +    KKYG
Sbjct: 62  LVLPQFRGAAFIYNKVVREQFKKYG 86

>pir||T05517 abscisic acid-induced protein homolog F13M23.100 - Arabidopsis
           thaliana gi|4455239|emb|CAB36738.1| abscisic
           acid-induced-like protein [Arabidopsis thaliana]
           gi|7269346|emb|CAB79405.1| abscisic acid-induced-like
           protein [Arabidopsis thaliana]
          Length = 116

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 39/85 (45%), Positives = 60/85 (69%)
 Frame = +2

Query: 80  LLFPTYASLKAIQSPGKLDDTQWLTYWVVYAFISTFESVGSIILQWIPLYYEIKLLFVLW 259
           LL+P YAS+ A++S  K+DD QWL YW++Y+F+S  E +   +++WIP++Y +KL+FV W
Sbjct: 2   LLYPLYASVIAMESTTKVDDEQWLAYWIIYSFLSLTELILQSLIEWIPIWYTVKLVFVAW 61

Query: 260 MIAPQTQGARKIYEDHIMPLLKKYG 334
           ++ PQ QGA  IY   +    KK+G
Sbjct: 62  LVLPQFQGAAFIYNRVVREQFKKHG 86



EST assemble image


clone accession position
1 LC026g04_r AV620779 1 520
2 LC044g02_r AV622154 38 523
3 LC074e06_r AV624216 343 836
4 LC078c03_r AV624476 550 984




Chlamydomonas reinhardtii
Kazusa DNA Research Institute