KCC002855A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002855A_C01 KCC002855A_c01
ttgtactttgtctttgcatacCGCTTGCTACTGCTTCCACACAGCTAGGCTAGCGCAAAC
AAAGATGCAGGTCTTTGCCAATCGCCAGGCCTCGGGTTTCAAGGCCCGCGCGGAGCGCCC
TTCGCGGATCTCCCGTGTGCTCGTGCCTGTGGTTCACGCCGTCGCTGCGGAGACCAAGCA
GGTCGGTCCCGATGGCCGCACGCTGCGCCGCTCGCTGAACCAGACGGGCCGCTATGTGCG
CCAGCCCACCAACGACCCCGCCAGCCAGGTCAAGATGGACGAGCACGGTGTGGGCTACTC
CACCAGCGGCCTGGTGGCGCAGATGCGCACCCAGAACAACCTGTGGAAGGAGGGCGACGT
GACCGTCAAGCTGGCCAAGGCGTACGGCTACTGCTGGGGCGTGGAGCGCGCGGTGCGCAT
GGCCTACGAGGCGCGCCTGGCGCACCCCGACAAGAAGGTGTTCGTGACCAACGAGATCAT
CCACAACCCCGAGGTCAACTCGCGCCTGAAGGAGATGAACATTGAGGTTGTGGAGGATGA
GGGCAAGGGCAAGGACTACTCCATGATTGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002855A_C01 KCC002855A_c01
         (572 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00110421.1| COG0761: Penicillin tolerance protein [Nostoc...   114  1e-24
ref|NP_892383.1| LytB protein homolog [Prochlorococcus marinus s...   110  1e-23
pir||T04781 hypothetical protein F10M10.120 - Arabidopsis thalia...   107  9e-23
ref|NP_567965.1| ISPH [Arabidopsis thaliana] gi|14596179|gb|AAK6...   107  9e-23
ref|NP_485028.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   107  2e-22

>ref|ZP_00110421.1| COG0761: Penicillin tolerance protein [Nostoc punctiforme]
          Length = 402

 Score =  114 bits (284), Expect = 1e-24
 Identities = 55/130 (42%), Positives = 86/130 (65%), Gaps = 3/130 (2%)
 Frame = +2

Query: 191 DGRTLRRSLNQTGRYVRQPTN---DPASQVKMDEHGVGYSTSGLVAQMRTQNNLWKEGDV 361
           D +  +RSL  +  Y R+      + A+Q++ +        S L+ ++R +N + + GDV
Sbjct: 2   DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQ------SNLIQEIRDRNYILQRGDV 55

Query: 362 TVKLAKAYGYCWGVERAVRMAYEARLAHPDKKVFVTNEIIHNPEVNSRLKEMNIEVVEDE 541
           T++LA+A+G+CWGVERAV MAYE R   P + +++TNEIIHNP VN R++EM +E +  E
Sbjct: 56  TIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIE 115

Query: 542 GKGKDYSMIG 571
           GK KD+S++G
Sbjct: 116 GKNKDFSVVG 125

>ref|NP_892383.1| LytB protein homolog [Prochlorococcus marinus subsp. pastoris str.
           CCMP1378] gi|33633764|emb|CAE18723.1| LytB protein
           homolog [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 398

 Score =  110 bits (275), Expect = 1e-23
 Identities = 51/126 (40%), Positives = 82/126 (64%)
 Frame = +2

Query: 191 DGRTLRRSLNQTGRYVRQPTNDPASQVKMDEHGVGYSTSGLVAQMRTQNNLWKEGDVTVK 370
           D +  RRSL+ + RY R+  + P  + +  E       S L+  +R  +  +K+G + +K
Sbjct: 2   DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAY---QSDLITSIRNNSFTYKKGRLNIK 58

Query: 371 LAKAYGYCWGVERAVRMAYEARLAHPDKKVFVTNEIIHNPEVNSRLKEMNIEVVEDEGKG 550
           LA+A+G+CWGVERAV MAYE R  +PD+ +++TNEIIHNP VN  L++MN++ +  +   
Sbjct: 59  LAQAFGFCWGVERAVAMAYETRRHYPDENIWITNEIIHNPSVNDHLRKMNVKFISAKNGI 118

Query: 551 KDYSMI 568
           KD+S++
Sbjct: 119 KDFSLV 124

>pir||T04781 hypothetical protein F10M10.120 - Arabidopsis thaliana
           gi|4455180|emb|CAB36712.1| putative protein [Arabidopsis
           thaliana] gi|7270385|emb|CAB80152.1| putative protein
           [Arabidopsis thaliana]
          Length = 452

 Score =  107 bits (268), Expect = 9e-23
 Identities = 50/126 (39%), Positives = 82/126 (64%)
 Frame = +2

Query: 191 DGRTLRRSLNQTGRYVRQPTNDPASQVKMDEHGVGYSTSGLVAQMRTQNNLWKEGDVTVK 370
           D +  R++L ++  Y R+        +K+        TS ++  ++T    +  GDVTVK
Sbjct: 58  DAKVFRKNLTRSDNYNRKGFGHKEETLKLMNREY---TSDILETLKTNGYTYSWGDVTVK 114

Query: 371 LAKAYGYCWGVERAVRMAYEARLAHPDKKVFVTNEIIHNPEVNSRLKEMNIEVVEDEGKG 550
           LAKAYG+CWGVERAV++AYEAR   P++++++TNEIIHNP VN RL++M+++++  E   
Sbjct: 115 LAKAYGFCWGVERAVQIAYEARKQFPEERLWITNEIIHNPTVNKRLEDMDVKIIPVEDSK 174

Query: 551 KDYSMI 568
           K + ++
Sbjct: 175 KQFDVV 180

>ref|NP_567965.1| ISPH [Arabidopsis thaliana] gi|14596179|gb|AAK68817.1| putative
           protein [Arabidopsis thaliana]
           gi|20148251|gb|AAM10016.1| putative protein [Arabidopsis
           thaliana] gi|27368105|gb|AAN87171.1| ISPH [Arabidopsis
           thaliana]
          Length = 466

 Score =  107 bits (268), Expect = 9e-23
 Identities = 50/126 (39%), Positives = 82/126 (64%)
 Frame = +2

Query: 191 DGRTLRRSLNQTGRYVRQPTNDPASQVKMDEHGVGYSTSGLVAQMRTQNNLWKEGDVTVK 370
           D +  R++L ++  Y R+        +K+        TS ++  ++T    +  GDVTVK
Sbjct: 58  DAKVFRKNLTRSDNYNRKGFGHKEETLKLMNREY---TSDILETLKTNGYTYSWGDVTVK 114

Query: 371 LAKAYGYCWGVERAVRMAYEARLAHPDKKVFVTNEIIHNPEVNSRLKEMNIEVVEDEGKG 550
           LAKAYG+CWGVERAV++AYEAR   P++++++TNEIIHNP VN RL++M+++++  E   
Sbjct: 115 LAKAYGFCWGVERAVQIAYEARKQFPEERLWITNEIIHNPTVNKRLEDMDVKIIPVEDSK 174

Query: 551 KDYSMI 568
           K + ++
Sbjct: 175 KQFDVV 180

>ref|NP_485028.1| hypothetical protein [Nostoc sp. PCC 7120]
           gi|20138568|sp|P58674|ISPH_ANASP
           4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           gi|25532849|pir||AF1929 hypothetical protein all0985
           [imported] - Nostoc sp. (strain PCC 7120)
           gi|17130331|dbj|BAB72942.1| ORF_ID:all0985~hypothetical
           protein [Nostoc sp. PCC 7120]
          Length = 402

 Score =  107 bits (266), Expect = 2e-22
 Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 3/130 (2%)
 Frame = +2

Query: 191 DGRTLRRSLNQTGRYVRQPTN---DPASQVKMDEHGVGYSTSGLVAQMRTQNNLWKEGDV 361
           D +T +R+L  +  Y R+      + A+Q++ +        S L+ ++R +N   + GDV
Sbjct: 2   DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQ------SSLIQEIRDRNYTLQRGDV 55

Query: 362 TVKLAKAYGYCWGVERAVRMAYEARLAHPDKKVFVTNEIIHNPEVNSRLKEMNIEVVEDE 541
           T++LA+A+G+CWGVERAV MAYE R   P +++++TNEIIHNP VN R++EM +  +  E
Sbjct: 56  TIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVE 115

Query: 542 GKGKDYSMIG 571
              KD+S++G
Sbjct: 116 AGNKDFSVVG 125



EST assemble image


clone accession position
1 LCL088c10_r AV631067 1 420
2 LCL022f11_r AV627206 22 452
3 LCL012f07_r AV626632 30 572
4 LC025c07_r AV620671 30 540
5 MX229g08_r BP090835 40 475




Chlamydomonas reinhardtii
Kazusa DNA Research Institute