KCC002847A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002847A_C01 KCC002847A_c01
tttGCTTTGGATTAACCTCTACCATTTTCAGCTAAATAACTCGCAAAATGTTGTCTGGCT
TACTTGGCCGCGCTGCGCCCGCCGCGCCCAGCAGCAGAAATGTCCAAATAGCACCGCAAA
CACCTCGCGCTCCGCTGCGAGCGTCAGGGCAAATACATGCACAGCCCACAACATCAGCGA
ACACGGTAACGTCAGAGGCGCGGTCAGCGGGCTCGGCGTCAACGTCCGGGCGGTCTTTAT
CGGCCAAGGACAAGCTGGCTATGCTGGATAAAGCCAAGGAGAAGCGCCTGGAGGCGCTGA
CGCAGGACGGGTACAACCCTTACAAGACGGGGGCGCCTGGCATAGTGGACGTGCGTCTCT
ACCATGCGGCAGTGGAGTCCCAAAAGCGCATGAGCACGAAGCTGTCGGAGGCGAACGCGC
AAATGACGCTAATGGAGCGGCGGATGGAGGAGACGACCAAGGACCTGCAGGACGCAGCGG
CGTTCCTCAAAAAGGTGGCCATGGAGTTTGGTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002847A_C01 KCC002847A_c01
         (514 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_317693.1| ENSANGP00000002326 [Anopheles gambiae] gi|30175...    47  1e-04
sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (...    47  2e-04
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    46  2e-04
ref|XP_323673.1| hypothetical protein [Neurospora crassa] gi|289...    46  3e-04
dbj|BAB03061.1| contains similarity to cell wall-plasma membrane...    45  5e-04

>ref|XP_317693.1| ENSANGP00000002326 [Anopheles gambiae] gi|30175520|gb|EAA12445.2|
           ENSANGP00000002326 [Anopheles gambiae str. PEST]
          Length = 739

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 1/137 (0%)
 Frame = -2

Query: 498 PPF*GTPLRPAGPWSSPPSAAPLASFARSPP-TASCSCAFGTPLPHGRDARPLCQAPPSC 322
           PP  G P  P    SS P   P  + A  PP T   +   G P P G    P   APP  
Sbjct: 572 PPTTGGP--PPAVGSSQPDPPPSLAPAPPPPATPLLTAPSGFPTPPGPPGPPATPAPPIA 629

Query: 321 KGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLPCSLMLWAVHVFALT 142
              T P    P A+P  +P       P        P PL A L LP ++   A  +F LT
Sbjct: 630 PFQTLPPPCAPPAAPCAFP-------PAPFQGPAAPPPLPALLPLPSAVTPEAPTLFGLT 682

Query: 141 LAAEREVFAVLFGHFCC 91
             A    F      FCC
Sbjct: 683 DDALPFEFCPPGPPFCC 699

 Score = 38.9 bits (89), Expect = 0.039
 Identities = 42/141 (29%), Positives = 46/141 (31%), Gaps = 30/141 (21%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPH------------ 364
           TP PP   TPL PA P + PP   P  S    PP    +     PLP             
Sbjct: 104 TPPPP---TPL-PAPPTAPPPPTFPRGSPQPPPPPPPVAPIPPVPLPQSLSFLGGAIPPP 159

Query: 363 --GRDARPLCQAPP-------SCKGCTRPASAPPGASPWLYPA*PACPW------PIKTA 229
             GR   P C  PP       +C     P   P G  P   PA            P    
Sbjct: 160 APGRPPPPACHIPPLPLPTGPTCPATNAPGLPPTGGGPPAVPASAPATMLAPPGAPGAPV 219

Query: 228 RTLTPSPL---TAPLTLPCSL 175
            TL  SPL   + P   PC L
Sbjct: 220 HTLLASPLLSSSTPQVPPCLL 240

 Score = 34.3 bits (77), Expect = 0.95
 Identities = 35/112 (31%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = -2

Query: 504 PWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGR--DARPLCQAP 331
           P P   G P RP GP   PP   P       PP         T  P      ARP+   P
Sbjct: 51  PEPTIRGPPPRPPGPPEGPPPIGP----ELIPPNGPLRPFLPTIWPSDTVPVARPVPTPP 106

Query: 330 PSCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLPCSL 175
           P       P + PP   P   P  P  P P+       P P   P+ LP SL
Sbjct: 107 PPTPLPAPPTAPPPPTFPRGSPQPPPPPPPV------APIP---PVPLPQSL 149

>sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 precursor (Hydroxyproline-rich
           glycoprotein 1) gi|12018147|gb|AAG45420.1|AF309494_1
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii]
          Length = 555

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 37/107 (34%), Positives = 48/107 (44%)
 Frame = -2

Query: 504 PWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPPS 325
           P PPF      P  P S PPS AP      +PPT   S +  +P+P      P   APPS
Sbjct: 276 PRPPFPANTPMPPSPPSPPPSPAP-----PTPPTPP-SPSPPSPVPPSPAPVPPSPAPPS 329

Query: 324 CKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLP 184
                 P+ APP  SP   P+    P P   + + +PSP  +P+  P
Sbjct: 330 PAPSPPPSPAPPTPSPSPSPSPSPSPSP---SPSPSPSPSPSPIPSP 373

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 40/100 (40%), Positives = 45/100 (45%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPP 328
           +P PP  G P  PA P  SPPS AP +    SP   S +     P P      P   APP
Sbjct: 62  SPAPPSPGPP-SPAPP--SPPSPAPPSPAPPSPAPPSPA----PPSPAPPSPAPPSPAPP 114

Query: 327 SCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSP 208
           S    + P+ APP  SP   PA P  P P   A  L PSP
Sbjct: 115 SPAPPSPPSPAPPSPSP---PA-PPSPSPPSPAPPLPPSP 150

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 40/113 (35%), Positives = 50/113 (43%), Gaps = 3/113 (2%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPP 328
           +P PP    P  PA P  +PPS AP +    SPP    S A  +P P      P   +PP
Sbjct: 90  SPAPPSPAPP-SPAPPSPAPPSPAPPSPAPPSPP----SPAPPSPSPPA----PPSPSPP 140

Query: 327 SCKGCTRPASAPPGASPWL--YPA*PACPWPIKTART-LTPSPLTAPLTLPCS 178
           S      P+ APP  SP +   P+ P  P P   + T  +PSP   P   P S
Sbjct: 141 SPAPPLPPSPAPPSPSPPVPPSPSPPVPPSPAPPSPTPPSPSPPVPPSPAPPS 193

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTAS----CSCAFGTPLPHGRDAR-PL 343
           +P PP   +P  P+     PPS AP +     PP+ S     S A  +P P       P 
Sbjct: 128 SPSPPAPPSPSPPSPAPPLPPSPAPPSPSPPVPPSPSPPVPPSPAPPSPTPPSPSPPVPP 187

Query: 342 CQAPPSCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSP 208
             APPS      P+ APP  +P + P+ PA P P   A    PSP
Sbjct: 188 SPAPPSPAPPVPPSPAPPSPAPPVPPS-PAPPSPPSPAPPSPPSP 231

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 30/105 (28%), Positives = 38/105 (35%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPP 328
           +P PP   +P  P  P  +PPS AP    + +PP+         P P      P     P
Sbjct: 188 SPAPP---SPAPPVPPSPAPPSPAPPVPPSPAPPSPPSPAPPSPPSPAPPSPSPPAPPSP 244

Query: 327 SCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPL 193
                  P+ APP   P   PA P  P P        P P   P+
Sbjct: 245 VPPSPAPPSPAPPSPKP---PAPPPPPSPPPPPPPRPPFPANTPM 286

 Score = 37.0 bits (84), Expect = 0.15
 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -2

Query: 471 PAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPPSCKGCTRPASAP 292
           P G ++ PPS AP +    SP   S +     P P      P   APPS      P+ AP
Sbjct: 33  PGGIFNCPPSPAPPSPAPPSPAPPSPA----PPSPAPPSPGPPSPAPPSPPSPAPPSPAP 88

Query: 291 PG-ASPWLYPA*PACPWPI-KTARTLTPSPLTAPLTLPCS 178
           P  A P   P  PA P P   +    +P+P + P   P S
Sbjct: 89  PSPAPPSPAPPSPAPPSPAPPSPAPPSPAPPSPPSPAPPS 128

 Score = 35.8 bits (81), Expect = 0.33
 Identities = 34/113 (30%), Positives = 43/113 (37%), Gaps = 5/113 (4%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPP 328
           +P PP    P  P  P   PP + P     R P  A+       P P    A P    PP
Sbjct: 248 SPAPPSPAPP-SPKPPAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTPPTPP 306

Query: 327 SCKGCT----RPASAPPG-ASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLP 184
           S    +     PA  PP  A P   P+ P  P P   + + +PSP  +P   P
Sbjct: 307 SPSPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSP 359

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 36/106 (33%), Positives = 42/106 (38%), Gaps = 1/106 (0%)
 Frame = -2

Query: 498 PPF*GTPLRPAGPWSSPPSAAPLASFARSPPTAS-CSCAFGTPLPHGRDARPLCQAPPSC 322
           PP    P  PA P + PP+AAP    A  PP A+    A   P P    ARP    PP  
Sbjct: 55  PPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPP 114

Query: 321 KGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLP 184
               +  S PP A+P  +   P  P P   AR     P   P   P
Sbjct: 115 PAAPKQPSPPPAAAPQQHAPTPPPPAP-PAARPAPTPPAPPPAAAP 159

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 38/118 (32%), Positives = 45/118 (37%), Gaps = 15/118 (12%)
 Frame = -2

Query: 504 PWPPF*GTPLR--PAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAP 331
           P PP    P +  P  P  +PP+A P  +    PP A+   A   P P      P    P
Sbjct: 121 PSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPP 180

Query: 330 PSCKGCTRPASAP---------PGASPWLYPA*P---ACPWPIKT-ARTLTPSPLTAP 196
           P      RP  AP         P A+P   P  P   A P P  T A T TP+P   P
Sbjct: 181 PPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATP 238

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 35/104 (33%), Positives = 38/104 (35%), Gaps = 7/104 (6%)
 Frame = -2

Query: 474 RPAGPWSSPPSAAPLASFARS---PPTASCSCAFGTPLPHGRDARPLCQAPPSCKGCTRP 304
           +P  P   PP AAP A+ AR    PP A+       P P     RP    PP      RP
Sbjct: 47  KPKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARP 106

Query: 303 ASAPPGASPWLYPA*PACPWPIKTA----RTLTPSPLTAPLTLP 184
           A  PP       PA P  P P   A       TP P   P   P
Sbjct: 107 APPPPPPP----PAAPKQPSPPPAAAPQQHAPTPPPPAPPAARP 146

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 38/105 (36%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = -2

Query: 507 TPWPPF*GTPLRP--AGPWSSPPSAAPLASFARSP---PTASCSCAFGTPLPHGRDARPL 343
           TP P    TP+ P  A P + P S AP A+ A +P   PTA+      TP P      P 
Sbjct: 190 TPAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTAT-PAPTATPAPGSTPGAPP 248

Query: 342 CQAPPSCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSP 208
              P +     RP S P   SP   PA  A P P     T TP+P
Sbjct: 249 AGRPGAPPPGVRPGSPPAAGSP---PAPGATPAP-----TTTPAP 285

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 40/118 (33%), Positives = 47/118 (38%), Gaps = 15/118 (12%)
 Frame = -2

Query: 504 PWPPF*GTPLRPAG-PWSSPPSAAPLASFARSPPTASCSCAFGTPLPH-----GRDARPL 343
           P PP    P  PA  P  +PP+  P A+   +PP      A  TP P      G  ARP 
Sbjct: 134 PTPP---PPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPT 190

Query: 342 CQ--------APPSCKGCTRPASAPPGASPWLYPA*PACPWPIKT-ARTLTPSPLTAP 196
                     APP      RP S  P A+P   P     P P  T A T TP+P + P
Sbjct: 191 PAPTATPTPVAPPPAAPTARPGSPAPAATPAPTPT----PAPTATPAPTATPAPGSTP 244

 Score = 39.7 bits (91), Expect = 0.023
 Identities = 38/115 (33%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
 Frame = -2

Query: 504 PWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPPS 325
           P PP      RPA P   PP AAP       PP A+      TP P    A      PP+
Sbjct: 95  PPPPPPPPAARPAPPPPPPPPAAPKQP--SPPPAAAPQQHAPTPPPPAPPAARPAPTPPA 152

Query: 324 CKGCTRPASAPP-------GASPWLYPA*PACPWPIKT-ARTLTPSPLTAPLTLP 184
                 P  APP         +P   P  PA P    T A T TP+P+  P   P
Sbjct: 153 PPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAP 207

 Score = 38.5 bits (88), Expect = 0.050
 Identities = 38/120 (31%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
 Frame = -2

Query: 498 PPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPPSC- 322
           PP    P  PA P   PP+AAP    A  PP    +     P P    A P   +PP   
Sbjct: 71  PPAAAPPHPPAAP---PPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAA 127

Query: 321 ----KGCTRPASAPPGASPWLYPA*P--------ACPWPIKTARTLTPSPLTAPLTLPCS 178
                  T P  APP A P   P  P        A P P   A   TP+P   P   P +
Sbjct: 128 APQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAA 187

 Score = 31.6 bits (70), Expect = 6.2
 Identities = 39/142 (27%), Positives = 46/142 (31%), Gaps = 32/142 (22%)
 Frame = -2

Query: 507 TPWPPF*GTPLRP---AGPWSSPPSAAPLASFARSPPT---------------------- 403
           TP  P  G P  P     P S P + +P A  A   PT                      
Sbjct: 243 TPGAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTP 302

Query: 402 ---ASCSCAFGTPLPHGR----DARPLCQAPPSCKGCTRPASAPPGASPWLYPA*PACPW 244
              A+      TP P G       RP     P  +G T PA AP   +P   P     P 
Sbjct: 303 APGAATPAPTATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLP- 361

Query: 243 PIKTARTLTPSPLTAPLTLPCS 178
               AR   P+   AP T+P S
Sbjct: 362 ----ARPAAPAGAAAPSTVPGS 379

>ref|XP_323673.1| hypothetical protein [Neurospora crassa] gi|28922080|gb|EAA31344.1|
           hypothetical protein [Neurospora crassa]
          Length = 1104

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 32/89 (35%), Positives = 40/89 (43%)
 Frame = -2

Query: 462 PWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPPSCKGCTRPASAPPGA 283
           P+  P  A P A++ARSPP            P+   ARP   APP     + P  APP  
Sbjct: 216 PYGMPQYAPPAATYARSPPAMQHYMPMVAQNPY---ARP---APPQSPIVSTPYQAPPMP 269

Query: 282 SPWLYPA*PACPWPIKTARTLTPSPLTAP 196
            P L P  PA   P  T   + P+P+T P
Sbjct: 270 PPALVPV-PAPHTPSSTHSHVVPTPMTPP 297

>dbj|BAB03061.1| contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.3 [Arabidopsis thaliana]
          Length = 334

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 34/108 (31%), Positives = 40/108 (36%)
 Frame = -2

Query: 507 TPWPPF*GTPLRPAGPWSSPPSAAPLASFARSPPTASCSCAFGTPLPHGRDARPLCQAPP 328
           TP PP    P  P  P + PP + P     + PPT    C   TP P      P    PP
Sbjct: 127 TPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPPT---PCPPPTPTPTPPVVTPPTPTPP 183

Query: 327 SCKGCTRPASAPPGASPWLYPA*PACPWPIKTARTLTPSPLTAPLTLP 184
                T P   PP  +P   P  P    P  T   +TP   T P+  P
Sbjct: 184 V---ITPPTPTPPVVTP-PTPTPPVITPPTPTPPVITPPTPTPPVVTP 227



EST assemble image


clone accession position
1 MX253d06_r BP092378 1 240
2 LC097b12_r AV625737 4 438
3 MX251c10_r BP092226 22 486
4 LC022f06_r AV620474 29 514




Chlamydomonas reinhardtii
Kazusa DNA Research Institute