Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002845A_C01 KCC002845A_c01
(893 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_006227.1| POU domain, class 3, transcription factor 3 [Ho... 44 0.005
ref|XP_316923.1| ENSANGP00000023986 [Anopheles gambiae] gi|30175... 42 0.018
ref|NP_612067.1| CG12502-PA [Drosophila melanogaster] gi|7292010... 41 0.031
ref|NP_620192.1| POU domain, class 3, transcription factor 3 [Ra... 40 0.040
ref|NP_032926.1| POU domain, class 3, transcription factor 3 [Mu... 40 0.040
>ref|NP_006227.1| POU domain, class 3, transcription factor 3 [Homo sapiens]
gi|2506534|sp|P20264|PO33_HUMAN POU domain, class 3,
transcription factor 3 (Brain-specific homeobox/POU
domain protein 1) (Brain-1) (Brn-1 protein)
gi|1902886|dbj|BAA19459.1| Brain-1 [Homo sapiens]
Length = 500
Score = 43.5 bits (101), Expect = 0.005
Identities = 21/45 (46%), Positives = 25/45 (54%)
Frame = -1
Query: 332 HTHGPHAHTHGPHAHTHAQPPAHRGRQTHAGSSGGGGSGTPVSAH 198
H H HAH H PH H HAQ P H G GGGG+G +++H
Sbjct: 272 HHHHHHAHPHPPHPH-HAQGPPHHG-------GGGGGAGPGLNSH 308
>ref|XP_316923.1| ENSANGP00000023986 [Anopheles gambiae] gi|30175226|gb|EAA12549.2|
ENSANGP00000023986 [Anopheles gambiae str. PEST]
Length = 123
Score = 41.6 bits (96), Expect = 0.018
Identities = 19/28 (67%), Positives = 21/28 (74%), Gaps = 1/28 (3%)
Frame = -2
Query: 343 DSCHTHT-AHTPTHTAHTPTHTHSLPHT 263
+SCH HT HTPTHT HT THTH+ HT
Sbjct: 47 ESCHIHTHTHTPTHT-HTHTHTHTHTHT 73
Score = 41.2 bits (95), Expect = 0.024
Identities = 20/38 (52%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = -2
Query: 373 VRAHSNQPTCDSCHTHTAHTPTHT-AHTPTHTHSLPHT 263
+ H++ PT HTHT HT THT HT THTH+ HT
Sbjct: 51 IHTHTHTPTHTHTHTHT-HTHTHTHIHTHTHTHTHTHT 87
Score = 35.8 bits (81), Expect = 0.99
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = -2
Query: 388 PTTRGVRAHSNQPTCDSCHTHTAHTPTHTAHTPTHTH 278
PT H++ T HTHT HT THT HT THTH
Sbjct: 58 PTHTHTHTHTHTHTHTHIHTHT-HTHTHT-HTHTHTH 92
>ref|NP_612067.1| CG12502-PA [Drosophila melanogaster] gi|7292010|gb|AAF47425.1|
CG12502-PA [Drosophila melanogaster]
Length = 735
Score = 40.8 bits (94), Expect = 0.031
Identities = 23/77 (29%), Positives = 32/77 (40%), Gaps = 12/77 (15%)
Frame = -1
Query: 332 HTHGPHAHTHGPHAHTH------------AQPPAHRGRQTHAGSSGGGGSGTPVSAHARL 189
H H H+H H H H +P G Q G GGGG G S+ AR+
Sbjct: 298 HRRHHHRHSHHHHHHHHKSSSSSVRRVRPVRPGLGAGSQPSGGGGGGGGGGAGSSSSARI 357
Query: 188 NHLRAKMLERHSRVCLL 138
+ +++R +R C L
Sbjct: 358 ISNSSSLIQRATRECSL 374
>ref|NP_620192.1| POU domain, class 3, transcription factor 3 [Rattus norvegicus]
gi|5915802|sp|Q63262|PO33_RAT POU domain, class 3,
transcription factor 3 (Brain-specific homeobox/POU
domain protein 1) (Brain-1) (Brn-1 protein)
gi|2760445|emb|CAA04893.1| Brain-1 (Brn-1) protein
[Rattus norvegicus]
Length = 497
Score = 40.4 bits (93), Expect = 0.040
Identities = 20/45 (44%), Positives = 24/45 (52%)
Frame = -1
Query: 332 HTHGPHAHTHGPHAHTHAQPPAHRGRQTHAGSSGGGGSGTPVSAH 198
H H HAH H PH H HAQ P H GGGG+G +++H
Sbjct: 271 HHHHHHAHPHPPHPH-HAQGPPHH---------GGGGAGPGLNSH 305
>ref|NP_032926.1| POU domain, class 3, transcription factor 3 [Mus musculus]
gi|399131|sp|P31361|PO33_MOUSE POU domain, class 3,
transcription factor 3 (Brain-specific homeobox/POU
domain protein 1) (Brain-1) (Brn-1 protein)
gi|423400|pir||S31223 transcription factor Brn-1 - mouse
gi|200445|gb|AAA39960.1| Brain-1 class III POU-domain
protein
Length = 495
Score = 40.4 bits (93), Expect = 0.040
Identities = 20/45 (44%), Positives = 24/45 (52%)
Frame = -1
Query: 332 HTHGPHAHTHGPHAHTHAQPPAHRGRQTHAGSSGGGGSGTPVSAH 198
H H HAH H PH H HAQ P H GGGG+G +++H
Sbjct: 269 HHHHHHAHPHPPHPH-HAQGPPHH---------GGGGAGPGLNSH 303
