KCC002841A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002841A_C01 KCC002841A_c01
cccagcgtttagCTTACTGTACGCCCAACAATTGGCCCCGTTAGGCCGGGCGGCGGTGTG
TGTCGCTCTCTTCGCTTACTAGACAATTAATTTGGTCATTGAAGTATAGCAAGAGCCCCA
ACATGGCAGATCTAGAGAGCCAGCTTCTGCAGGCTCTCAACGAGAAGGAATGCATCGCGG
ACTCGGGCGACTTCGCTAAGAGCCAGGGCGTGGACCACATGGCTGTTGTGGGCGTCATTC
GCAGTCTGCAGGCCTCCGAGATGATTGTAGCGGAGGACATCGATCACTTCCGCTACGCAC
TGACGGAGGAGAGCCAGACCTACCTGACGGCGGGCTCGCCCGAGGCGCAGGTGTTCGCGG
CGGTGGGCGCGGACGGCATCAGCCTGGCCGAGCTCAAGGTCAAGGTGCCGGGCGAGGCGG
GCGATGTGGGCTTCAAGCAGGCCATGCAGCAGAAGTGGCTGGCGCTGGACAAGAGCGCGG
GCGAGCCGCGGGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002841A_C01 KCC002841A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP36953.1| Homo sapiens phenylalanine-tRNA synthetase-like [...    77  2e-13
dbj|BAA95666.1| phenylalanyl tRNA synthetase beta subunit [Homo ...    77  2e-13
ref|NP_004452.1| phenylalanine-tRNA synthetase-like protein; phe...    77  2e-13
gb|AAH43565.1| similar to phenylalanine-tRNA synthetase-like pro...    77  2e-13
ref|XP_213840.2| similar to 0610012A19Rik protein [Rattus norveg...    76  2e-13

>gb|AAP36953.1| Homo sapiens phenylalanine-tRNA synthetase-like [synthetic
           construct]
          Length = 509

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 LLQALNEKECIADSGDFAKSQGVDHMAVVGVIRSLQA-SEMIVAEDIDHFRYALTEESQT 320
           LL+ L   +   DS + A   G++H AVVG ++SLQA  E+I AE      + LT E + 
Sbjct: 10  LLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEE 69

Query: 321 YLTAGSPEAQVFAAVGADGISLAELKVKVPGEAGDVGFKQAMQQKWLALDKSAGE-PRV 494
               GS EA+VF ++  +G++ +EL +++P  +G VGF +AM  KW+ +DKSA + PRV
Sbjct: 70  IAREGSHEARVFRSIPPEGLAQSEL-MRLP--SGKVGFSKAMSNKWIRVDKSAADGPRV 125

>dbj|BAA95666.1| phenylalanyl tRNA synthetase beta subunit [Homo sapiens]
          Length = 508

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 LLQALNEKECIADSGDFAKSQGVDHMAVVGVIRSLQA-SEMIVAEDIDHFRYALTEESQT 320
           LL+ L   +   DS + A   G++H AVVG ++SLQA  E+I AE      + LT E + 
Sbjct: 10  LLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEE 69

Query: 321 YLTAGSPEAQVFAAVGADGISLAELKVKVPGEAGDVGFKQAMQQKWLALDKSAGE-PRV 494
               GS EA+VF ++  +G++ +EL +++P  +G VGF +AM  KW+ +DKSA + PRV
Sbjct: 70  IAREGSHEARVFRSIPPEGLAQSEL-MRLP--SGKVGFSKAMSNKWIRVDKSAADGPRV 125

>ref|NP_004452.1| phenylalanine-tRNA synthetase-like protein; phenylalanine-tRNA
           synthetase alpha-subunit [Homo sapiens]
           gi|12643946|sp|Q9Y285|SYFA_HUMAN Phenylalanyl-tRNA
           synthetase alpha chain (Phenylalanine--tRNA ligase alpha
           chain) (PheRS) (CML33) gi|2102679|gb|AAB61694.1|
           putative tRNA synthetase-like protein [Homo sapiens]
           gi|4104935|gb|AAD02221.1| putative phenylalanyl-tRNA
           synthetase alpha-subunit; PheHA [Homo sapiens]
           gi|13676326|gb|AAH06495.1| Phenylalanine-tRNA
           synthetase-like protein [Homo sapiens]
           gi|30583235|gb|AAP35862.1| phenylalanine-tRNA
           synthetase-like [Homo sapiens]
          Length = 508

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 LLQALNEKECIADSGDFAKSQGVDHMAVVGVIRSLQA-SEMIVAEDIDHFRYALTEESQT 320
           LL+ L   +   DS + A   G++H AVVG ++SLQA  E+I AE      + LT E + 
Sbjct: 10  LLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEE 69

Query: 321 YLTAGSPEAQVFAAVGADGISLAELKVKVPGEAGDVGFKQAMQQKWLALDKSAGE-PRV 494
               GS EA+VF ++  +G++ +EL +++P  +G VGF +AM  KW+ +DKSA + PRV
Sbjct: 70  IAREGSHEARVFRSIPPEGLAQSEL-MRLP--SGKVGFSKAMSNKWIRVDKSAADGPRV 125

>gb|AAH43565.1| similar to phenylalanine-tRNA synthetase-like protein [Homo
           sapiens]
          Length = 507

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 LLQALNEKECIADSGDFAKSQGVDHMAVVGVIRSLQA-SEMIVAEDIDHFRYALTEESQT 320
           LL+ L   +   DS + A   G++H AVVG ++SLQA  E+I AE      + LT E + 
Sbjct: 9   LLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEE 68

Query: 321 YLTAGSPEAQVFAAVGADGISLAELKVKVPGEAGDVGFKQAMQQKWLALDKSAGE-PRV 494
               GS EA+VF ++  +G++ +EL +++P  +G VGF +AM  KW+ +DKSA + PRV
Sbjct: 69  IAREGSHEARVFRSIPPEGLAQSEL-MRLP--SGKVGFSKAMSNKWIRVDKSAADGPRV 124

>ref|XP_213840.2| similar to 0610012A19Rik protein [Rattus norvegicus]
          Length = 508

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
 Frame = +3

Query: 141 QLLQALNEKECIADSGDFAKSQGVDHMAVVGVIRSLQA-SEMIVAEDIDHFRYALTEESQ 317
           QLL+ L   +   DS + A   GV+H AVVG ++SLQA  E+I AE      + LT E +
Sbjct: 9   QLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGE 68

Query: 318 TYLTAGSPEAQVFAAVGADGISLAELKVKVPGEAGDVGFKQAMQQKWLALDKSAGE-PRV 494
                GS EA+VF ++  +G+  +EL +++P  +G VGF +AM  KW+ +DKSA + PRV
Sbjct: 69  EIAREGSHEARVFRSIPLEGLVQSEL-MQLP--SGKVGFSKAMSNKWIRVDKSAADGPRV 125



EST assemble image


clone accession position
1 LC020c09_r AV620303 1 494
2 LCL018b04_r AV626920 13 432
3 LC069b07_r AV623825 13 431




Chlamydomonas reinhardtii
Kazusa DNA Research Institute