KCC002840A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002840A_C01 KCC002840A_c01
cggcataCTTGCCGCCGTAATTGAGGTCATTAGCATAAAAATGCAGCTCGGCCAGCGCGT
TCGCCCCTTCAGCGGCGCCTCGGCGGCCCGCAAGCCCGCCCGCGCTAGCGTCACCGTGCG
CGCGTCCGGTGCCAAGCGCGACCCCAAGCAGCGCATTGTCATCACTGGTATTGGGATTTG
CAGCGTCCACGGCAACGACCCCGATACCTTCTACCAGAAGCTGCTGAACGGCGAGAGCGG
CGTTGGCCTGATCGACCGATTCGATGCGTCGGAGTTCCCCACTCGCTTCGCCGCCCAGAT
CAGGAACTTTGACGACGAGAACCTGATCGACAAGAAGAACGCCCGCCGTTACGATGACTG
CCTCAAGTACACTATGGTGTCGGGCAAGAAGGCTCTGATCATGGCCGGACTGGAGAAGCG
AGCGCTGCTCCCGAGGCGCTACAAGAAGGTTGACCCCCACCCCGTGCTGGCGTGTGCATT
GATGAGGCACACGGCTATTGGGCTGGCCCCTGACCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002840A_C01 KCC002840A_c01
         (517 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK58535.1| beta-ketoacyl-ACP synthetase I [Coriandrum sativum]    136  1e-31
ref|NP_199441.1| 3-oxoacyl-[acyl-carrier-protein] synthase I pre...   134  7e-31
emb|CAD40963.1| OSJNBa0027P08.15 [Oryza sativa (japonica cultiva...   134  7e-31
gb|AAF61738.1|AF244519_1 beta-ketoacyl-ACP synthetase 1 [Brassic...   133  1e-30
gb|AAC49118.1| 3-ketoacyl-acyl carrier protein synthase I             133  1e-30

>gb|AAK58535.1| beta-ketoacyl-ACP synthetase I [Coriandrum sativum]
          Length = 456

 Score =  136 bits (343), Expect = 1e-31
 Identities = 69/110 (62%), Positives = 82/110 (73%), Gaps = 2/110 (1%)
 Frame = +2

Query: 89  RKPARASVTVRASGAKR--DPKQRIVITGIGICSVHGNDPDTFYQKLLNGESGVGLIDRF 262
           R P + SV   ++  KR  DPK+R+V+TG+G+ SV GND DT+Y KLL GESGV  IDRF
Sbjct: 24  RPPRKLSVFATSASPKREKDPKKRVVVTGLGVVSVFGNDVDTYYDKLLAGESGVDFIDRF 83

Query: 263 DASEFPTRFAAQIRNFDDENLIDKKNARRYDDCLKYTMVSGKKALIMAGL 412
           DASEFPTRFAAQIR F  E  ID KN RR D+CL+Y +V+GKKAL  AGL
Sbjct: 84  DASEFPTRFAAQIRAFSSEGYIDSKNDRRLDNCLRYNIVAGKKALENAGL 133

>ref|NP_199441.1| 3-oxoacyl-[acyl-carrier-protein] synthase I precursor
           (beta-ketoacyl-acp synthase I) (KAS I) (sp|P52410)
           [Arabidopsis thaliana] gi|20141399|sp|P52410|FABB_ARATH
           3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
           precursor (Beta-ketoacyl-ACP synthase I) (KAS I)
           gi|10177710|dbj|BAB11084.1|
           3-oxoacyl-[acyl-carrier-protein] synthase I precursor
           [Arabidopsis thaliana] gi|14335164|gb|AAK59862.1|
           AT5g46290/MPL12_7 [Arabidopsis thaliana]
           gi|20334810|gb|AAM16266.1| AT5g46290/MPL12_7
           [Arabidopsis thaliana] gi|21593429|gb|AAM65396.1|
           3-oxoacyl-(acyl-carrier-protein) synthase I precursor
           (beta-ketoacyl-acp synthase I) (KAS I) [Arabidopsis
           thaliana] gi|21703101|gb|AAM74493.1| AT5g46290/MPL12_7
           [Arabidopsis thaliana]
          Length = 473

 Score =  134 bits (337), Expect = 7e-31
 Identities = 71/130 (54%), Positives = 89/130 (67%)
 Frame = +2

Query: 23  EVISIKMQLGQRVRPFSGASAARKPARASVTVRASGAKRDPKQRIVITGIGICSVHGNDP 202
           ++I+    L ++ R F  ASA+        TV A   + DPK+R+VITG+G+ SV GND 
Sbjct: 27  QLITNARPLRRQQRSFISASAS--------TVSAPKRETDPKKRVVITGMGLVSVFGNDV 78

Query: 203 DTFYQKLLNGESGVGLIDRFDASEFPTRFAAQIRNFDDENLIDKKNARRYDDCLKYTMVS 382
           D +Y+KLL+GESG+ LIDRFDAS+FPTRF  QIR F  E  ID KN RR DDCLKY +V+
Sbjct: 79  DAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVA 138

Query: 383 GKKALIMAGL 412
           GKKAL  A L
Sbjct: 139 GKKALESANL 148

>emb|CAD40963.1| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)]
          Length = 462

 Score =  134 bits (337), Expect = 7e-31
 Identities = 73/130 (56%), Positives = 89/130 (68%), Gaps = 6/130 (4%)
 Frame = +2

Query: 47  LGQRVRPFSGASAARK--PARASVTVRASGA----KRDPKQRIVITGIGICSVHGNDPDT 208
           LG R+ P   A   R+  P R +V V A+ +    + DP++R+VITG+G+ SV GN+ D 
Sbjct: 8   LGLRISPPPPAPPRRRARPRRRAVRVAAAASAPRRETDPRKRVVITGMGLVSVFGNEVDA 67

Query: 209 FYQKLLNGESGVGLIDRFDASEFPTRFAAQIRNFDDENLIDKKNARRYDDCLKYTMVSGK 388
           FY++LL GESGVG IDRFDA  FPTRFA QIR F  E  ID KN RR DDCL+Y +VSGK
Sbjct: 68  FYERLLAGESGVGAIDRFDAGGFPTRFAGQIRGFSSEGYIDGKNDRRLDDCLRYCIVSGK 127

Query: 389 KALIMAGLEK 418
           KAL  AGL K
Sbjct: 128 KALENAGLGK 137

>gb|AAF61738.1|AF244519_1 beta-ketoacyl-ACP synthetase 1 [Brassica napus]
          Length = 295

 Score =  133 bits (335), Expect = 1e-30
 Identities = 65/103 (63%), Positives = 78/103 (75%)
 Frame = +2

Query: 104 ASVTVRASGAKRDPKQRIVITGIGICSVHGNDPDTFYQKLLNGESGVGLIDRFDASEFPT 283
           AS +V A   + DPK+R+VITG+G+ SV GND D +Y+KLL+GESG+ LIDRFDAS+FPT
Sbjct: 42  ASASVSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPT 101

Query: 284 RFAAQIRNFDDENLIDKKNARRYDDCLKYTMVSGKKALIMAGL 412
           RF  QIR F  E  ID KN RR DDCLKY +V+GKKAL  A L
Sbjct: 102 RFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANL 144

>gb|AAC49118.1| 3-ketoacyl-acyl carrier protein synthase I
          Length = 473

 Score =  133 bits (335), Expect = 1e-30
 Identities = 71/130 (54%), Positives = 89/130 (67%)
 Frame = +2

Query: 23  EVISIKMQLGQRVRPFSGASAARKPARASVTVRASGAKRDPKQRIVITGIGICSVHGNDP 202
           ++I+    L ++ R F  ASA+        TV A   + DPK+R+VITG+G+ SV GND 
Sbjct: 27  QLITNARPLRRQQRSFISASAS--------TVSAPKRETDPKKRVVITGMGLVSVCGNDV 78

Query: 203 DTFYQKLLNGESGVGLIDRFDASEFPTRFAAQIRNFDDENLIDKKNARRYDDCLKYTMVS 382
           D +Y+KLL+GESG+ LIDRFDAS+FPTRF  QIR F  E  ID KN RR DDCLKY +V+
Sbjct: 79  DAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVA 138

Query: 383 GKKALIMAGL 412
           GKKAL  A L
Sbjct: 139 GKKALESANL 148



EST assemble image


clone accession position
1 LC020b03_r AV620288 1 504
2 MX236b08_r BP091265 8 471
3 MXL017f05_r BP094063 11 378
4 MX008a04_r BP086399 12 416
5 MX260g10_r BP092916 17 478
6 LCL088b07_r AV631052 18 503
7 MX226h10_r BP090643 78 256
8 MX233d12_r BP091078 245 527




Chlamydomonas reinhardtii
Kazusa DNA Research Institute