KCC002838A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002838A_C01 KCC002838A_c01
taccaggctaCTTAACGTGACGTATTACACGGCTAGTTAAACGCGTAGGCGAATCACGAG
AGGCCCCAAGACAGATTTGCGCAGTCCTCACCGAGAATGCAGGACCCCACTCTGCCGTTC
CAGTACAAGTCCCATGACTCACTTCGTCTAGGGCTGCCGTCGCTCAAGGAGGACGCAGCG
GTGAAGCACCCAGTGGAGATCATTCAGGTGGAGTCCCGCCAACGCGCGCAGGCCGCTCAG
GGCCAGATGCTGCGTGACCTCTACGGGATAGCGGCGCCTGCCAAGGCTCAGATTGAGTCG
CAAATCCTGGGCCGGTTCACCCGCCTGCCGGGGGCGGGGCCCTCGTCCCTGCTGGGGCTG
GAGTCTCTCACCGGCGAGCTGGACGAGTTCAAGTATGAGTCCTACCTGGGCCTCCCCGAC
ATGTCCACTCTGCCGCCCGTGGATCTGCACAGCCAGATGGAGCTCAAGCACGGGCTAGCG
GCTGTGGGCAAGGACCAGATGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002838A_C01 KCC002838A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T51959 hypothetical protein [imported] - Picea mariana gi|2...   107  6e-23
ref|NP_198681.1| expressed protein [Arabidopsis thaliana] gi|101...    94  7e-19
gb|AAG00256.1|AC002130_21 F1N21.7 [Arabidopsis thaliana]               90  2e-17
ref|NP_564892.1| expressed protein [Arabidopsis thaliana] gi|149...    90  2e-17
ref|XP_213700.1| similar to chromosome 13 open reading frame 12 ...    57  1e-07

>pir||T51959 hypothetical protein [imported] - Picea mariana
           gi|2982245|gb|AAC32110.1| hypothetical protein [Picea
           mariana]
          Length = 141

 Score =  107 bits (268), Expect = 6e-23
 Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
 Frame = +1

Query: 136 DSLRLGLPSLKEDAAVKHPVEIIQVESRQRAQAAQGQMLRDLYGIAAPAKAQIESQILGR 315
           D+LR GL  +K D  + HPV++IQ  ++++ +  +  +L   YG A P K  IE QIL R
Sbjct: 17  DTLRFGLAGVKSDILISHPVQVIQENAQKQQREMKRNILAKTYGSAFPLKMDIEQQILSR 76

Query: 316 FTRLPGAGPSSLLGLESLTGELDEFKYESYLGLP-DMSTLPPVDLHSQMELKHGLA 480
           F R PG  PSS+LGLESLTG LDEF +E YL  P +  T  P D+H  ME++ GL+
Sbjct: 77  FQRPPGELPSSMLGLESLTGSLDEFSFEDYLNDPRESETFVPADMHHGMEVRLGLS 132

>ref|NP_198681.1| expressed protein [Arabidopsis thaliana]
           gi|10176833|dbj|BAB10155.1|
           gb|AAB95243.1~gene_id:MBB18.20~similar to unknown
           protein [Arabidopsis thaliana]
           gi|19347883|gb|AAL85998.1| unknown protein [Arabidopsis
           thaliana] gi|21281209|gb|AAM45059.1| unknown protein
           [Arabidopsis thaliana] gi|21593744|gb|AAM65711.1|
           unknown [Arabidopsis thaliana]
          Length = 141

 Score = 94.4 bits (233), Expect = 7e-19
 Identities = 50/117 (42%), Positives = 68/117 (57%), Gaps = 1/117 (0%)
 Frame = +1

Query: 133 HDSLRLGLPSLKEDAAVKHPVEIIQVESRQRAQAAQGQMLRDLYGIAAPAKAQIESQILG 312
           +D+LR GL  +K D    HP+E      +Q  +  + +++   YG A P K  ++ QIL 
Sbjct: 16  NDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYGAALPLKMDLDRQILS 75

Query: 313 RFTRLPGAGPSSLLGLESLTGELDEFKYESYLGLP-DMSTLPPVDLHSQMELKHGLA 480
           RF R PG  PSS+LGLE  TG LD F +E YL  P +  TL PVD H  ME++ GL+
Sbjct: 76  RFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVDFHHGMEVRLGLS 132

>gb|AAG00256.1|AC002130_21 F1N21.7 [Arabidopsis thaliana]
          Length = 303

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 47/117 (40%), Positives = 68/117 (57%), Gaps = 1/117 (0%)
 Frame = +1

Query: 133 HDSLRLGLPSLKEDAAVKHPVEIIQVESRQRAQAAQGQMLRDLYGIAAPAKAQIESQILG 312
           +D+LR GL  +K +    HP+E      ++  +A +  ++   YG A P K  ++ QIL 
Sbjct: 16  NDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYGTALPLKMDMDRQILS 75

Query: 313 RFTRLPGAGPSSLLGLESLTGELDEFKYESYLGLP-DMSTLPPVDLHSQMELKHGLA 480
           RF R PG  PSS+LGLE  TG +D+F +E YL  P D  T  PVD H  ME++ G++
Sbjct: 76  RFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVDFHHGMEVRLGIS 132

>ref|NP_564892.1| expressed protein [Arabidopsis thaliana] gi|14994239|gb|AAK73254.1|
           Unknown protein [Arabidopsis thaliana]
           gi|21555316|gb|AAM63832.1| unknown [Arabidopsis
           thaliana] gi|26449510|dbj|BAC41881.1| unknown protein
           [Arabidopsis thaliana] gi|28372850|gb|AAO39907.1|
           At1g67250 [Arabidopsis thaliana]
          Length = 141

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 47/117 (40%), Positives = 68/117 (57%), Gaps = 1/117 (0%)
 Frame = +1

Query: 133 HDSLRLGLPSLKEDAAVKHPVEIIQVESRQRAQAAQGQMLRDLYGIAAPAKAQIESQILG 312
           +D+LR GL  +K +    HP+E      ++  +A +  ++   YG A P K  ++ QIL 
Sbjct: 16  NDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYGTALPLKMDMDRQILS 75

Query: 313 RFTRLPGAGPSSLLGLESLTGELDEFKYESYLGLP-DMSTLPPVDLHSQMELKHGLA 480
           RF R PG  PSS+LGLE  TG +D+F +E YL  P D  T  PVD H  ME++ G++
Sbjct: 76  RFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVDFHHGMEVRLGIS 132

>ref|XP_213700.1| similar to chromosome 13 open reading frame 12 [Rattus norvegicus]
          Length = 141

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 38/118 (32%), Positives = 58/118 (48%)
 Frame = +1

Query: 124 YKSHDSLRLGLPSLKEDAAVKHPVEIIQVESRQRAQAAQGQMLRDLYGIAAPAKAQIESQ 303
           ++SHD LR G   +K +    HP+E+ +   +          LR++ G+ AP K Q+E +
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 304 ILGRFTRLPGAGPSSLLGLESLTGELDEFKYESYLGLPDMSTLPPVDLHSQMELKHGL 477
            + +  RLP   PSS L L+ L G  +   +E  L  P  S L   + H  +E K GL
Sbjct: 85  AVQQVQRLPFL-PSSNLSLDILRGNDETIGFEDILNDPSQSELMG-EPHMMVEYKLGL 140



EST assemble image


clone accession position
1 LC020a06_r AV620281 1 503
2 MXL074f08_r BP097376 11 453
3 MX048b11_r BP087967 23 369




Chlamydomonas reinhardtii
Kazusa DNA Research Institute