KCC002836A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002836A_C01 KCC002836A_c01
gtcgatttatgaccagtaacagctctgcaactgtgcctatcgtcctcctcctcgggccaa
tcatcctgcttgcactcctcGCCAAGCTCTATCCTTATCAGCTCAACCCCGAACCGGCTA
GCATCAACGGTACCTGCGCAGCGGGTACCAAGCAGCAAGCCGGCATGGACGCAGGCGTGT
GGGACAAGAAGTATGGCGAGGAGGAGTTCGTATACGGCCGGGAGCCCAACGTGCACGTGC
GCCAGGCGGCTGAGCGCTACCTGAACCAGGTGCCGGGCGGCGCGCTGGTGGTGGAGCTGG
CCAGCGGCGAGGGGCGCAACGTGGCGTACCTGGCGGCGGCGGGCCACCGGGTCATTGCCG
TGGACTTCTCCCAGGCGGGTCTGGACAAGACCATGGCACTGGTGGCGGCCCGCGGCGGCG
GATCCGCCGCCGCCCTCGTCAAGCCCGTGCTGGCCGACATGACGGCCTGGTCTCCCCCGG
GGGGGCCGGGCAGTGTGGACGCGGTGGTGCTGTCGTTCTGCCACATGCGGGCGGACGACC
GACCCAAGGTCATGGCGGCGGTGGTGGAGTGGCTCAAGCCGGGCGGCCTGCTCATCCAGG
AGGTGTTCCACCCCAACCAGGTGCACAAGGGCTACCGGGAGACGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002836A_C01 KCC002836A_c01
         (646 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00080718.1| COG0500: SAM-dependent methyltransferases [Ge...    97  3e-19
ref|NP_253802.1| conserved hypothetical protein [Pseudomonas aer...    92  8e-18
ref|NP_656652.1| adh_short, short chain dehydrogenase [Bacillus ...    91  1e-17
ref|NP_832524.1| Methyltransferase [Bacillus cereus ATCC 14579] ...    89  7e-17
ref|NP_443019.1| unknown protein [Synechocystis sp. PCC 6803] gi...    88  9e-17

>ref|ZP_00080718.1| COG0500: SAM-dependent methyltransferases [Geobacter
           metallireducens]
          Length = 201

 Score = 96.7 bits (239), Expect = 3e-19
 Identities = 59/149 (39%), Positives = 83/149 (55%)
 Frame = +3

Query: 177 VWDKKYGEEEFVYGREPNVHVRQAAERYLNQVPGGALVVELASGEGRNVAYLAAAGHRVI 356
           +WD++Y   +FVYGREPN  + +  +    Q+P G ++  LA GEGRN  +LA  GHRV+
Sbjct: 7   MWDERYDTTDFVYGREPNAFLAEVVQ----QIPPGDVLC-LAEGEGRNAVFLAKQGHRVL 61

Query: 357 AVDFSQAGLDKTMALVAARGGGSAAALVKPVLADMTAWSPPGGPGSVDAVVLSFCHMRAD 536
           AVD S  GL K     AAR    +   ++   AD+  ++    P   DA+V  FCH+   
Sbjct: 62  AVDSSAVGLVK-----AARLAEESGVRIETETADLAEFAIE--PVCWDAIVSIFCHVPPQ 114

Query: 537 DRPKVMAAVVEWLKPGGLLIQEVFHPNQV 623
            R  +   VVE L+PGGL I E + P Q+
Sbjct: 115 VRRALHRKVVEGLRPGGLFILEAYTPAQL 143

>ref|NP_253802.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
           gi|11348292|pir||B83007 conserved hypothetical protein
           PA5115 [imported] - Pseudomonas aeruginosa (strain PAO1)
           gi|9951412|gb|AAG08500.1|AE004924_5 conserved
           hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 194

 Score = 91.7 bits (226), Expect = 8e-18
 Identities = 51/152 (33%), Positives = 81/152 (52%)
 Frame = +3

Query: 177 VWDKKYGEEEFVYGREPNVHVRQAAERYLNQVPGGALVVELASGEGRNVAYLAAAGHRVI 356
           +WD++Y  EE+VYG EPN  +++ A+R    V      + +A GEGRN  +LA+ G  V+
Sbjct: 1   MWDERYAAEEYVYGTEPNAFLKEHAQRLAGPV------LSVAEGEGRNAVFLASLGLEVL 54

Query: 357 AVDFSQAGLDKTMALVAARGGGSAAALVKPVLADMTAWSPPGGPGSVDAVVLSFCHMRAD 536
            VD S  GL K   L  A+G       +  ++ D+  + PP    +  AVV  F H+ + 
Sbjct: 55  GVDGSTVGLAKARRLAEAKG-----VSIDTLVVDLADYEPPA--AAFGAVVSIFAHLPSR 107

Query: 537 DRPKVMAAVVEWLKPGGLLIQEVFHPNQVHKG 632
            R ++   +   L+PGGL + E + P Q+ +G
Sbjct: 108 VRGRLNRLLERSLRPGGLFLLEAYRPEQLGRG 139

>ref|NP_656652.1| adh_short, short chain dehydrogenase [Bacillus anthracis A2012]
           gi|30262739|ref|NP_845116.1| conserved hypothetical
           protein [Bacillus anthracis str. Ames]
           gi|30257371|gb|AAP26602.1| conserved hypothetical
           protein [Bacillus anthracis str. Ames]
          Length = 200

 Score = 90.9 bits (224), Expect = 1e-17
 Identities = 50/151 (33%), Positives = 80/151 (52%)
 Frame = +3

Query: 180 WDKKYGEEEFVYGREPNVHVRQAAERYLNQVPGGALVVELASGEGRNVAYLAAAGHRVIA 359
           W+ +Y  +E+ YG  PNV +++ A R +N       V+  A GEGRN  +LA  GH+V A
Sbjct: 5   WNDRYKSDEYFYGETPNVFIKEQAFRLINHNK----VIAFAEGEGRNAIFLAKQGHKVTA 60

Query: 360 VDFSQAGLDKTMALVAARGGGSAAALVKPVLADMTAWSPPGGPGSVDAVVLSFCHMRADD 539
           +D+S+ GL+KT  L            V     D+ A S P      DA ++ F H   D 
Sbjct: 61  IDYSEDGLEKTKKLAKKHN-----VEVHTKKVDLLADSLP--VDEYDAAIMVFGHFHNDH 113

Query: 540 RPKVMAAVVEWLKPGGLLIQEVFHPNQVHKG 632
           +  ++  +++ +KPGGL++ EV+   Q++ G
Sbjct: 114 QKMILDKMIQTIKPGGLIMFEVYSKKQINYG 144

>ref|NP_832524.1| Methyltransferase [Bacillus cereus ATCC 14579]
           gi|29896446|gb|AAP09725.1| Methyltransferase [Bacillus
           cereus ATCC 14579]
          Length = 199

 Score = 88.6 bits (218), Expect = 7e-17
 Identities = 49/151 (32%), Positives = 78/151 (51%)
 Frame = +3

Query: 180 WDKKYGEEEFVYGREPNVHVRQAAERYLNQVPGGALVVELASGEGRNVAYLAAAGHRVIA 359
           W+ +Y  +E+ YG EPN  +++ A R  N       V+  A GEGRN  +LA  G+ V A
Sbjct: 6   WNDRYKSDEYFYGEEPNTFIKEQAFRLANHNK----VIAFAEGEGRNAVFLARQGNEVTA 61

Query: 360 VDFSQAGLDKTMALVAARGGGSAAALVKPVLADMTAWSPPGGPGSVDAVVLSFCHMRADD 539
           +D+S+ GL+KT  L            V     D+ A S P      DA ++ F H   D 
Sbjct: 62  IDYSEDGLEKTKKLAEKHN-----VNVHTKKVDLLADSLP--ENEYDAAIMVFGHFHDDY 114

Query: 540 RPKVMAAVVEWLKPGGLLIQEVFHPNQVHKG 632
           +  ++  +++ +KPGGL++ EV+   Q++ G
Sbjct: 115 KKMILGKMIQTIKPGGLIMFEVYSKKQINYG 145

>ref|NP_443019.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469807|pir||S76919
           hypothetical protein - Synechocystis sp. (strain PCC
           6803) gi|1653921|dbj|BAA18831.1| ORF_ID:slr1183~unknown
           protein [Synechocystis sp. PCC 6803]
          Length = 194

 Score = 88.2 bits (217), Expect = 9e-17
 Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 4/153 (2%)
 Frame = +3

Query: 177 VWDKKYGEEEFVYGREPNVHVRQAAERYLNQVPGGALVVELASGEGRNVAYLAAAGHRVI 356
           +WD+++ + E+VYG EPN  +   A    NQ+P G ++  LA GEGRN  +LA+ G+ V 
Sbjct: 1   MWDERFSQSEYVYGTEPNDFLVSVA----NQIPQGKILC-LAEGEGRNACFLASLGYEVT 55

Query: 357 AVDFSQAGLDKTMALVAARGGGSAAALVKPVLADM----TAWSPPGGPGSVDAVVLSFCH 524
           AVD S  GL K   L  A+  G     V+  LAD      AW         + +V  FCH
Sbjct: 56  AVDQSSVGLAKAKQL--AQEKGVKITTVQSNLADFDIVADAW---------EGIVSIFCH 104

Query: 525 MRADDRPKVMAAVVEWLKPGGLLIQEVFHPNQV 623
           + +  R ++   V + LKPGG+ I E F P Q+
Sbjct: 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137



EST assemble image


clone accession position
1 MX220a03_r BP090172 1 250
2 LC019c04_r AV620224 137 646




Chlamydomonas reinhardtii
Kazusa DNA Research Institute