Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002834A_C01 KCC002834A_c01
(537 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissu... 68 7e-11
pir||T03640 high mobility group protein MNB1b - maize (fragment)... 64 1e-09
sp|P27347|MNBB_MAIZE DNA-binding protein MNB1B (HMG1-like protei... 61 8e-09
sp|P40621|HMGL_WHEAT HMG1/2-like protein gi|100791|pir||S18991 h... 60 2e-08
ref|NP_190756.1| high mobility group protein 2-related [Arabidop... 59 3e-08
>gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 68.2 bits (165), Expect = 7e-11
Identities = 43/88 (48%), Positives = 56/88 (62%), Gaps = 3/88 (3%)
Frame = +1
Query: 184 KKATKPAKAE--KAPKAEKAPKVEKPKAMRAPSAYNLFYKAIFQQVRSENPD-KKVTELG 354
K A KPAK K KAEK P KPK R PSA+ +F + +Q + +NP+ K+V+ +G
Sbjct: 23 KAAEKPAKKPVVKKSKAEKDPN--KPK--RPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 78
Query: 355 SKVRDKWASISALERAPYEAQAAARKKE 438
DKW S+SA E+APYEA+AA RK E
Sbjct: 79 KAAGDKWKSMSATEKAPYEAKAAKRKAE 106
>pir||T03640 high mobility group protein MNB1b - maize (fragment)
gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 63.9 bits (154), Expect = 1e-09
Identities = 45/134 (33%), Positives = 67/134 (49%), Gaps = 7/134 (5%)
Frame = +1
Query: 109 RAIAPARRAMVIRSFSESNDAAPPAKKATKPAKAEKAPKAEKAPKVEKP-KAMRAPSAYN 285
R+++P AM + A AK A K AEK K K + P K RAPSA+
Sbjct: 3 RSVSPLESAM--KGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFF 60
Query: 286 LFYKAIFQQVRSENP-DKKVTELGSKVRDKWASISALERAPYEAQAAARKKEVDA----- 447
+F + ++ + +NP +K V +G D+W S+S ++APY A+A K E +
Sbjct: 61 VFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAY 120
Query: 448 KRAEVLAAKKAAAR 489
+ E AAKKA A+
Sbjct: 121 NKGESTAAKKAPAK 134
>sp|P27347|MNBB_MAIZE DNA-binding protein MNB1B (HMG1-like protein) gi|539062|pir||B47150
high mobility group protein MNB1b - maize
gi|22329|emb|CAA41220.1| high mobility group protein
[Zea mays] gi|5441502|emb|CAB46752.1| HMGa protein [Zea
mays] gi|22347617|gb|AAM95942.1| nucleosome/chromatin
assembly factor group D protein [Zea mays]
Length = 157
Score = 61.2 bits (147), Expect = 8e-09
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Frame = +1
Query: 172 APPAKKATKPAKAEKAPKAEKAPKVEKPKAMRAPSAYNLFYKAIFQQVRSENP-DKKVTE 348
A +K A KPAK K KA K P KPK RAPSA+ +F + ++ + +NP +K V
Sbjct: 17 AVKSKGAEKPAKGRKG-KAGKDPN--KPK--RAPSAFFVFMEEFRKEFKEKNPKNKSVAA 71
Query: 349 LGSKVRDKWASISALERAPYEAQAAARKKEVDA-----KRAEVLAAKKAAAR 489
+G D+W S+S ++APY A+A K E + + E AAKKA A+
Sbjct: 72 VGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAK 123
>sp|P40621|HMGL_WHEAT HMG1/2-like protein gi|100791|pir||S18991 high mobility group
protein - wheat gi|21803|emb|CAA77641.1| high mobility
group protein [Triticum aestivum]
Length = 161
Score = 59.7 bits (143), Expect = 2e-08
Identities = 44/117 (37%), Positives = 61/117 (51%), Gaps = 9/117 (7%)
Frame = +1
Query: 172 APPAKKATKPAKAEKAPKAEKAPKVEKPKAMRAPSAYNLFYKAIFQQVRSENP-DKKVTE 348
A +K A KPA K KA K P KPK RAPSA+ +F ++ + +NP +K V
Sbjct: 17 AVKSKGAEKPAAKGKKGKAGKDPN--KPK--RAPSAFFVFMGEFREEFKQKNPKNKSVAA 72
Query: 349 LGSKVRDKWASISALERAPYEAQAAARKKEVD--------AKRAEVLAAKKAAARPV 495
+G ++W S+S E+APY A+A K E + + A A KKAAA+ V
Sbjct: 73 VGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEV 129
>ref|NP_190756.1| high mobility group protein 2-related [Arabidopsis thaliana]
gi|11346370|pir||T51159 HMG protein [imported] -
Arabidopsis thaliana gi|2832357|emb|CAA74400.1| HMG
protein [Arabidopsis thaliana] gi|3068715|gb|AAC14415.1|
unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis
thaliana] gi|21360557|gb|AAM47475.1| At3g51880/ORF13
[Arabidopsis thaliana]
Length = 178
Score = 59.3 bits (142), Expect = 3e-08
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 178 PAKKATKPAKAEKAPKAEKAPKVEKPKAMRAPSAYNLFYKAIFQQVRSENPD-KKVTELG 354
PA+K TK + K KA+K P KPK RAPSA+ +F + + ENP+ K V+ +G
Sbjct: 31 PAEKPTK-RETRKEKKAKKDPN--KPK--RAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 85
Query: 355 SKVRDKWASISALERAPYEAQAAARKKEVD 444
KW S+S E+APYE +AA RK E +
Sbjct: 86 KAGGQKWKSMSQAEKAPYEEKAAKRKAEYE 115
