KCC002833A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002833A_C01 KCC002833A_c01
ctacatgcataccttgaTAATTAACGCTTAGCACACCAAGAAAAGGAGGCTCGGACTTTC
CCTCTTGTCATACTCCTGTGTTTAAAATGCAAGCGCCTCATTCGAGTCTTGCACAATGTG
CCAGGACGGTTGCATCCAGTCCGCGACCAGGCGTGCTAGTTGCCGGCCGTGCGCTGTCTG
CACGGCGCACGCCAACTGGCAAGGTCGTTCCACAGTCTGTACCCTGGTCTGTACCGTTGG
TTCATCGCGCGTCTGGGGCACACGCACGCGTTCATGCCGGGCGTGAGGTTTCAAGCACCG
ACGTGGAGATTGCGCGGTTGACGGACGCAATCGTCACCGCGGAGAACAAGCTGGCAGCCT
TGTTTGAGCCGGGCAAGCCCATGCCCCGAGCTGGCATTGTGGCAGCTGCGCGCCAGGAGG
TGTCGGACATGAAGGCGCAGCTGGCGGCGCTCATGGGCGGCGCCGCAGCAGCTTCGGCGG
GGGTTTCTGACGGAGCCCTCACTGATGATGAGCTGGCGGAGAAGGACGGCAGGCTTTCTG
GAGGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002833A_C01 KCC002833A_c01
         (546 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_859476.1| hypothetical protein Chr3_0420 [Leishmania majo...    42  0.007
gb|AAO38851.1| sublingual apomucin [Mus musculus]                      41  0.012
gb|AAO49800.1| MUC19 [Mus musculus]                                    40  0.016
gb|AAK94670.1| subtilisin-like protein [Toxoplasma gondii]             39  0.045
ref|NP_650304.1| CG9351-PA [Drosophila melanogaster] gi|24646660...    39  0.045

>ref|NP_859476.1| hypothetical protein Chr3_0420 [Leishmania major]
            gi|21629340|gb|AAM69017.1|AC125735_47 hypothetical
            protein Chr3_0420 [Leishmania major]
          Length = 2554

 Score = 41.6 bits (96), Expect = 0.007
 Identities = 32/100 (32%), Positives = 42/100 (42%)
 Frame = -3

Query: 544  PPESLPSFSASSSSVRAPSETPAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGS 365
            P  S PS   S     + +   A AA APP S++S    S  SW AA   P R     GS
Sbjct: 1264 PVRSRPSLGTSRGGCTSTATAAAAAAEAPPTSSSST---SRVSWAAALRQPQRANLTSGS 1320

Query: 364  NKAASLFSAVTIASVNRAISTSVLETSRPA*TRACAPDAR 245
              +  + S    A+ N   +T+ +  S  A T   A D R
Sbjct: 1321 --SGGVGSNAASAAANMITATTTMNNSSTATTATAAVDLR 1358

>gb|AAO38851.1| sublingual apomucin [Mus musculus]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
 Frame = -3

Query: 541 PESLPSFSASSSSVRAPSETPAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSN 362
           P S  + +A +SS  + + TPAE A +    A S      TS RAA T P    G  GS+
Sbjct: 285 PTSSATTAAPASSSASSATTPAETAGSTTGPAVSTTSAGSTSARAATTSPG---GSSGSS 341

Query: 361 KAASLFS--AVTIASVNRAISTSVLETSRPA*TRACAPDAR*T---NGTDQGTDCGTTLP 197
             AS  S  A T  S     +T+    +      + AP A  T   +G  +  +  T+ P
Sbjct: 342 APASSTSGRAATTTSTATTTTTTTTTATTVGSAGSSAPTASSTAAGSGLREAAN-ATSAP 400

Query: 196 VGVRRADSARPATSTPGRGLDATVLAHCA 110
           V    + S +P  ST   G  ++V +  A
Sbjct: 401 V----STSGQPGASTGSSGTSSSVSSTAA 425

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 42/153 (27%), Positives = 60/153 (38%), Gaps = 9/153 (5%)
 Frame = -3

Query: 541 PESLPSFSASSSSVRAPSETPAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSN 362
           P S  + +A +SS  + + TPAE A +    A S      TS RAA T P    G  GS+
Sbjct: 122 PTSSATTAAPASSSASSATTPAETAGSTTGPAVSTTSAGSTSARAATTSPG---GSSGSS 178

Query: 361 KAASLFSAVTIASVNRAISTSVLETSRPA*TRACAPDAR*TNGTDQGTDCGTTLPVGVRR 182
             AS  S     + + A +T+   T+      A         G+   T   T    G+R 
Sbjct: 179 APASSTSGRAATTTSTATTTTTTTTTATTVGSA---------GSSAPTASSTAAGSGLRE 229

Query: 181 A---------DSARPATSTPGRGLDATVLAHCA 110
           A          S +P  ST   G  ++V +  A
Sbjct: 230 AANATSAPASTSGQPGASTGSSGTSSSVSSTAA 262

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
 Frame = -3

Query: 526 SFSASSSSVRAPSET---PAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSNKA 356
           S +A+ S +R  +     P   +  P  S  S    S  S  AAAT         G+  A
Sbjct: 382 SSTAAGSGLREAANATSAPVSTSGQPGASTGSSGTSSSVSSTAAATTA-------GTTTA 434

Query: 355 ASLFSAVTIASVNRAISTSVLETSRPA*TRACAPDAR*TNGTDQGTDCGTTLPVGVRRAD 176
           AS     T A  + A  TS   T+ PA + A +     T     G+  G  +      + 
Sbjct: 435 AS---NETSAPASTAGPTSSATTAAPASSSASSAT---TLAETAGSTTGPAVSTTSAGST 488

Query: 175 SARPATSTPGRGLDATVLA 119
           SAR AT++PG    ++ LA
Sbjct: 489 SARAATTSPGGSSGSSSLA 507

>gb|AAO49800.1| MUC19 [Mus musculus]
          Length = 610

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 42/153 (27%), Positives = 60/153 (38%), Gaps = 9/153 (5%)
 Frame = -3

Query: 541 PESLPSFSASSSSVRAPSETPAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSN 362
           P S  + +A +SS  + + TPAE A +    A S      TS RAA T P    G  GS+
Sbjct: 81  PTSSATTAAPASSSASSATTPAETAGSTTGPAVSTTSAGSTSARAATTSPG---GSSGSS 137

Query: 361 KAASLFSAVTIASVNRAISTSVLETSRPA*TRACAPDAR*TNGTDQGTDCGTTLPVGVRR 182
             AS  S     + + A +T+   T+      A         G+   T   T    G+R 
Sbjct: 138 APASSTSGRAATTTSTATTTTTTTTTATTVGSA---------GSSAPTASSTAAGSGLRE 188

Query: 181 A---------DSARPATSTPGRGLDATVLAHCA 110
           A          S +P  ST   G  ++V +  A
Sbjct: 189 AANATSAPASTSGQPGASTGSSGTSSSVSSTAA 221

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 40/139 (28%), Positives = 57/139 (40%), Gaps = 3/139 (2%)
 Frame = -3

Query: 526 SFSASSSSVRAPSET---PAEAAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSNKA 356
           S +A+ S +R  +     PA  +  P  S  S    S  S  AAAT         G+  A
Sbjct: 178 SSTAAGSGLREAANATSAPASTSGQPGASTGSSGTSSSVSSTAAATTA-------GTTTA 230

Query: 355 ASLFSAVTIASVNRAISTSVLETSRPA*TRACAPDAR*TNGTDQGTDCGTTLPVGVRRAD 176
           AS     T A  + A  TS   T+ PA + A +     T     G+  G  +      + 
Sbjct: 231 AS---NETSAPASTAGPTSSATTAAPASSSASSAT---TLAETAGSTTGPAVSTTSAGST 284

Query: 175 SARPATSTPGRGLDATVLA 119
           SAR AT++PG    ++ LA
Sbjct: 285 SARAATTSPGGSSGSSSLA 303

>gb|AAK94670.1| subtilisin-like protein [Toxoplasma gondii]
          Length = 795

 Score = 38.9 bits (89), Expect = 0.045
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 525 PSPPAHHQ*GLRQKPPPKLLRRRP*APPAAPSCP--TPPGAQLPQCQLGAWACPAQTRLP 352
           PSPPA      +  PPP+     P  PP+APS P  TPP A  P  +    A     R P
Sbjct: 573 PSPPAQPTPQPQPHPPPQ-----PETPPSAPSPPPPTPPSAPSPSPRTPPSAPSPSPRTP 627

Query: 351 ACSP 340
            C+P
Sbjct: 628 PCAP 631

>ref|NP_650304.1| CG9351-PA [Drosophila melanogaster] gi|24646660|ref|NP_731849.1|
            CG9351-PB [Drosophila melanogaster]
            gi|24646662|ref|NP_731850.1| CG9351-PC [Drosophila
            melanogaster] gi|7299795|gb|AAF54974.1| CG9351-PA
            [Drosophila melanogaster] gi|23171207|gb|AAN13587.1|
            CG9351-PB [Drosophila melanogaster]
            gi|23171208|gb|AAN13588.1| CG9351-PC [Drosophila
            melanogaster]
          Length = 954

 Score = 38.9 bits (89), Expect = 0.045
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
 Frame = -3

Query: 508  SSVRAPSETPAE------AAAAPPMSAASCAFMSDTSWRAAATMPARGMGLPGSNKAASL 347
            SSV AP     E      A+A+P  S++S    + +S  ++++  +     PGS+ AASL
Sbjct: 774  SSVEAPQSQELELSQSAAASASPTSSSSSLEASTSSSSASSSSSSSSSSSPPGSSAAASL 833

Query: 346  FSAVTIASVNRAISTSVLETSRPA*TRACAPDAR*TNGTDQGTDCGTTLPVGVRRADSAR 167
              + T+A+V  +   S + T+  A   A A     TN +   +         +  AD+  
Sbjct: 834  CDSATVAAVAASQFLSTIATAMAASVTAAAA----TNSSPSISPAPAVSSPDIENADAQL 889

Query: 166  PAT---STPGRG 140
            P +   S+P  G
Sbjct: 890  PPSDDASSPASG 901



EST assemble image


clone accession position
1 LC026f03_r AV620771 1 546
2 LC018c09_r AV620152 18 361
3 MX062c03_r BP088509 19 375




Chlamydomonas reinhardtii
Kazusa DNA Research Institute