Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002829A_C01 KCC002829A_c01
(553 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P49208|RK1_PEA 50S RIBOSOMAL PROTEIN L1, CHLOROPLAST PRECURSO... 111 9e-32
pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsi... 106 5e-31
ref|NP_191908.1| ribosomal protein L1p family [Arabidopsis thali... 106 5e-31
ref|NP_295768.1| ribosomal protein L1 [Deinococcus radiodurans] ... 100 2e-26
ref|NP_924546.1| 50S ribosomal protein L1 [Gloeobacter violaceus... 94 1e-25
>sp|P49208|RK1_PEA 50S RIBOSOMAL PROTEIN L1, CHLOROPLAST PRECURSOR
gi|7440580|pir||T06492 ribosomal protein L1, chloroplast
- garden pea (fragment) gi|577089|emb|CAA58020.1|
chloroplast ribosomal protein L1 [Pisum sativum]
Length = 208
Score = 111 bits (277), Expect(2) = 9e-32
Identities = 53/72 (73%), Positives = 64/72 (88%)
Frame = +3
Query: 336 LDPKFSDQQLRATVSLPFGTGKELRVAVLTQNDNIKLAKDAGADVVGGDDLIEKISGGFM 515
+DPK++DQQLRATVSLP GTGK ++VAVLTQ + AK+AGAD+VGG+DLIE+I GGFM
Sbjct: 102 IDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADLVGGEDLIEQIKGGFM 161
Query: 516 EFDKLIATPDMM 551
EFDKLIA+PDMM
Sbjct: 162 EFDKLIASPDMM 173
Score = 47.4 bits (111), Expect(2) = 9e-32
Identities = 26/57 (45%), Positives = 36/57 (62%)
Frame = +2
Query: 176 VRKEKPRSKRFKAMQTKTPGRTSELDPKEAIRLVKQTASTKFTESVEFHARMGLGPQ 346
++ ++ RSKRF +Q K E D K AI LVK+TA TKF E+VE H R+ + P+
Sbjct: 50 LKSDRVRSKRFLEIQ-KLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPK 105
>pir||T51934 ribosomal protein L1 protein [imported] - Arabidopsis thaliana
gi|7572940|emb|CAA62364.1| L1 protein [Arabidopsis
thaliana]
Length = 346
Score = 106 bits (264), Expect(2) = 5e-31
Identities = 51/72 (70%), Positives = 61/72 (83%)
Frame = +3
Query: 336 LDPKFSDQQLRATVSLPFGTGKELRVAVLTQNDNIKLAKDAGADVVGGDDLIEKISGGFM 515
+DPK++DQQLRATVSLP GTG+ + VAVL Q + + AK AGAD+VG DDLIE+I GGFM
Sbjct: 158 IDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFM 217
Query: 516 EFDKLIATPDMM 551
EFDKLIA+PDMM
Sbjct: 218 EFDKLIASPDMM 229
Score = 50.1 bits (118), Expect(2) = 5e-31
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Frame = +2
Query: 107 VVRAAALDEEVEFEVVAN------KPQQN-----VRKEKPRSKRFKAMQTKTPGRTSELD 253
V A LD E + E A KP++ +++++ RSKRF +Q K E D
Sbjct: 72 VAAEADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFLEIQ-KLRETKKEYD 130
Query: 254 PKEAIRLVKQTASTKFTESVEFHARMGLGPQ 346
AI L+KQTA+T+F ESVE H R+ + P+
Sbjct: 131 VNTAISLLKQTANTRFVESVEAHFRLNIDPK 161
>ref|NP_191908.1| ribosomal protein L1p family [Arabidopsis thaliana]
gi|11358771|pir||T49190 ribosomal protein L1-like
protein - Arabidopsis thaliana
gi|7573332|emb|CAB87802.1| chloroplast ribosomal L1-like
protein [Arabidopsis thaliana]
gi|15450737|gb|AAK96640.1| AT3g63490/MAA21_120
[Arabidopsis thaliana] gi|16649119|gb|AAL24411.1|
chloroplast ribosomal L1-like protein [Arabidopsis
thaliana] gi|22137008|gb|AAM91349.1| At3g63490/MAA21_120
[Arabidopsis thaliana] gi|24899727|gb|AAN65078.1|
chloroplast ribosomal L1-like protein [Arabidopsis
thaliana]
Length = 346
Score = 106 bits (264), Expect(2) = 5e-31
Identities = 51/72 (70%), Positives = 61/72 (83%)
Frame = +3
Query: 336 LDPKFSDQQLRATVSLPFGTGKELRVAVLTQNDNIKLAKDAGADVVGGDDLIEKISGGFM 515
+DPK++DQQLRATVSLP GTG+ + VAVL Q + + AK AGAD+VG DDLIE+I GGFM
Sbjct: 158 IDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFM 217
Query: 516 EFDKLIATPDMM 551
EFDKLIA+PDMM
Sbjct: 218 EFDKLIASPDMM 229
Score = 50.1 bits (118), Expect(2) = 5e-31
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Frame = +2
Query: 107 VVRAAALDEEVEFEVVAN------KPQQN-----VRKEKPRSKRFKAMQTKTPGRTSELD 253
V A LD E + E A KP++ +++++ RSKRF +Q K E D
Sbjct: 72 VAAEADLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDRTRSKRFLEIQ-KLRETKKEYD 130
Query: 254 PKEAIRLVKQTASTKFTESVEFHARMGLGPQ 346
AI L+KQTA+T+F ESVE H R+ + P+
Sbjct: 131 VNTAISLLKQTANTRFVESVEAHFRLNIDPK 161
>ref|NP_295768.1| ribosomal protein L1 [Deinococcus radiodurans]
gi|33301474|sp|Q9RSS8|RL1_DEIRA 50S ribosomal protein L1
gi|7473803|pir||F75323 ribosomal protein L1 -
Deinococcus radiodurans (strain R1)
gi|6459833|gb|AAF11592.1|AE002040_9 ribosomal protein L1
[Deinococcus radiodurans]
Length = 233
Score = 100 bits (248), Expect(2) = 2e-26
Identities = 44/72 (61%), Positives = 62/72 (86%)
Frame = +3
Query: 336 LDPKFSDQQLRATVSLPFGTGKELRVAVLTQNDNIKLAKDAGADVVGGDDLIEKISGGFM 515
+DP+ SDQ +R TV+LP GTG+ +RVAV+T+ +N++ A+ AGADVVG D+LIE+I+GGFM
Sbjct: 50 IDPRKSDQNVRGTVALPHGTGRSVRVAVITKGENVQAAEAAGADVVGSDELIERIAGGFM 109
Query: 516 EFDKLIATPDMM 551
+FD ++ATPDMM
Sbjct: 110 DFDAVVATPDMM 121
Score = 40.4 bits (93), Expect(2) = 2e-26
Identities = 20/49 (40%), Positives = 31/49 (62%)
Frame = +2
Query: 200 KRFKAMQTKTPGRTSELDPKEAIRLVKQTASTKFTESVEFHARMGLGPQ 346
KR++A++ K R + EA LVK+ A+ KF E+VE H R+G+ P+
Sbjct: 6 KRYRALEGKVD-RNKQYSIDEAAALVKELATAKFDETVEVHFRLGIDPR 53
>ref|NP_924546.1| 50S ribosomal protein L1 [Gloeobacter violaceus]
gi|35212165|dbj|BAC89541.1| 50S ribosomal protein L1
[Gloeobacter violaceus]
Length = 238
Score = 94.4 bits (233), Expect(2) = 1e-25
Identities = 41/72 (56%), Positives = 60/72 (82%)
Frame = +3
Query: 336 LDPKFSDQQLRATVSLPFGTGKELRVAVLTQNDNIKLAKDAGADVVGGDDLIEKISGGFM 515
++PK++DQQ+R+TV LP GTGK +R+AVL + + ++ A+ AGAD+ G ++LIE+I GGFM
Sbjct: 50 INPKYADQQVRSTVVLPRGTGKAIRIAVLAKGEKVREAEKAGADIAGSEELIERIQGGFM 109
Query: 516 EFDKLIATPDMM 551
EFD +IATPD+M
Sbjct: 110 EFDLMIATPDIM 121
Score = 43.5 bits (101), Expect(2) = 1e-25
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +2
Query: 197 SKRFKAMQTKTPGRTSELDPKEAIRLVKQTASTKFTESVEFHARMGLGPQ 346
SKR KA++ + +T P++A+ L+KQTA+ KF E+ E H R+G+ P+
Sbjct: 5 SKRLKALREQVDRQTIYA-PQKALELLKQTANAKFDETAETHIRLGINPK 53
