KCC002826A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002826A_C01 KCC002826A_c01
ctggcttcactgcatgtacCTGAGTTCTGCCTTACGTGACTCCAGGCCTTGCCACATTCG
CATTCTCCTACTTGCACACGTCAGAAATTTGGAATCCCGCTTCCTTTGCGCGCCACGACG
ATGCACACGCTAGCTCCTCGAGGTTGTGTCGGCAATATCGCGTCCTTGCGTAGCGCGTGC
CGGCGGCAACAGTTGGCAGCATGCAGCCCAGTCGCGCCTCGACCACACGCCCCGGCAAGC
CACCTGTGGCTCGGTGCCCGCCCAGCCCCCAGCCGGGCGGTGCAAGCGCGCATCTTTGAT
GGCCTAAAGAACCTATTTCCAGGCGGCGGTCCTAAGAATCAGGAGCCGGAGAAGCAGTTG
CTGTCGGAGGAGGAGGAGGGCGAGGAGGAGGACGAGGGGGCTGAGATGAAGCGGCTGGAC
TCGGAGGGCGGCGGCCTGGCGGAGGGGCAAGGCGTTTTCGGGCCGCTGGCCGTGCTGCTT
GTGGGCTTCATGGCGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002826A_C01 KCC002826A_c01
         (497 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis]           56  3e-07
gb|AAC52865.1| neural variant mena++ protein [Mus musculus]            55  4e-07
ref|NP_034265.1| enabled homolog; NPC derived proline rich prote...    55  4e-07
gb|AAC52863.1| mena protein [Mus musculus]                             55  4e-07
ref|XP_341166.1| similar to mena protein [Rattus norvegicus]           55  4e-07

>emb|CAC39318.1| VMP3 protein [Volvox carteri f. nagariensis]
          Length = 687

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 29/53 (54%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPD 338
           PP SP    P    R  PPP  RPP+P      PRPPPRPPP P++   P PD
Sbjct: 493 PPPSPVPPTPPPSPR--PPPSPRPPNPPPRPPSPRPPPRPPPRPSSPRPPPPD 543

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/56 (42%), Positives = 29/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPP----RPPPRPPPPPTATASPAP 341
           PP SP+   P  R     PP R PP P++   PP     PPP PP PPT+ + P P
Sbjct: 508 PPPSPRPPNPPPRPPSPRPPPRPPPRPSSPRPPPPDPSPPPPSPPSPPTSPSPPDP 563

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 25/52 (48%), Positives = 27/52 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP SP   RP       PPP   PP+P  S +PP P PRPP PP    SP P
Sbjct: 483 PPPSPPPPRP-------PPPSPVPPTPPPSPRPP-PSPRPPNPPPRPPSPRP 526

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 24/55 (43%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPP--RPPPRPPPPPTATASPAPDS 335
           P  P    P+     APPP   PPSP   + PP   PPP PPPP     SP P S
Sbjct: 577 PNPPSPDPPSPDPPSAPPPSPPPPSPPPPNPPPPSPPPPNPPPPSPPPPSPPPPS 631

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 23/52 (44%), Positives = 25/52 (47%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP SP    P       PPP   PPSP   S PP  PP P PPP +   P+P
Sbjct: 598 PPPSPPPPNPPPPS--PPPPNPPPPSPPPPSPPPPSPPPPNPPPPSPPPPSP 647

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 23/52 (44%), Positives = 24/52 (45%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP SP    P       PPP   PPSP   S PP  PP P PPP +   P P
Sbjct: 608 PPPSPPPPNP-------PPPSPPPPSPPPPSPPPPNPPPPSPPPPSPRPPTP 652

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 25/51 (48%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           P  P    P+A     PPP   PP+P   S PP  PP P PPP +   P+P
Sbjct: 582 PDPPSPDPPSAPPPSPPPPSPPPPNPPPPSPPPPNPPPPSPPPPSPPPPSP 632

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 24/51 (46%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           P  P A  P+      PPP   PPSP   + PP  PP P PPP +   P P
Sbjct: 587 PDPPSAPPPSPPPPSPPPPNPPPPSPPPPNPPPPSPPPPSPPPPSPPPPNP 637

 Score = 44.3 bits (103), Expect = 8e-04
 Identities = 24/54 (44%), Positives = 26/54 (47%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS 335
           PP SP    P       PPP  RPP+P   S PP P P P PPPT  + P   S
Sbjct: 628 PPPSPPPPNPPPPS--PPPPSPRPPTPPPPSPPP-PRPPPRPPPTRRSPPPTSS 678

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 27/67 (40%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPP------------RPPPRPPP-PPTAT 356
           PP SP    P       PPP   PP+P   S PP             PPPRPPP PP   
Sbjct: 618 PPPSPPPPSP-------PPPSPPPPNPPPPSPPPPSPRPPTPPPPSPPPPRPPPRPPPTR 670

Query: 355 ASPAPDS 335
            SP P S
Sbjct: 671 RSPPPTS 677

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 26/58 (44%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
 Frame = -2

Query: 496 PP*SPQAARPA-ARKRLAP-PPGRRPPSPAASSQPP--RPPPRPPPPPTATASPAPDS 335
           PP SP    PA A    +P PP   PPSP   S  P   PPP PPPP     +P P S
Sbjct: 554 PPTSPSPPDPAWANLPTSPDPPSPNPPSPDPPSPDPPSAPPPSPPPPSPPPPNPPPPS 611

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 20/51 (39%), Positives = 22/51 (42%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           P  P    P+       PP   PPSP   S PP  PP P PPP     P+P
Sbjct: 572 PDPPSPNPPSPDPPSPDPPSAPPPSPPPPSPPPPNPPPPSPPPPNPPPPSP 622

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRP----------PPRPPPPPTATASP 347
           PP  P + RP       PPP   PPSP  S  PP P          PP P PP     SP
Sbjct: 530 PPPRPSSPRPPPPDPSPPPPS--PPSPPTSPSPPDPAWANLPTSPDPPSPNPPSPDPPSP 587

Query: 346 APDS 335
            P S
Sbjct: 588 DPPS 591

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 23/51 (45%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
 Frame = -2

Query: 487 SPQAARPAARKRLAP--PPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           SP    P +     P  PP   PPSP     PPRPPP  P PPT   SP P
Sbjct: 462 SPDECPPLSVLETLPSAPPSPPPPSPP----PPRPPPPSPVPPTPPPSPRP 508

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 25/61 (40%), Positives = 27/61 (43%), Gaps = 8/61 (13%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPP---GRRPPSPAASSQPPRPP-----PRPPPPPTATASPAP 341
           PP  P + RP  R    PPP     RPP P  S  PP PP     P PP P  A    +P
Sbjct: 517 PPPRPPSPRPPPR----PPPRPSSPRPPPPDPSPPPPSPPSPPTSPSPPDPAWANLPTSP 572

Query: 340 D 338
           D
Sbjct: 573 D 573

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 21/48 (43%), Positives = 25/48 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATA 353
           PP SP   RP      +PPP R PP P  + + P PP   PPPP A +
Sbjct: 643 PPPSP---RPPTPPPPSPPPPRPPPRPPPTRRSP-PPTSSPPPPVAVS 686

 Score = 38.9 bits (89), Expect = 0.035
 Identities = 22/52 (42%), Positives = 23/52 (43%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP S     P+A     PP    P  P  S  PP PPP P PPP    SP P
Sbjct: 467 PPLSVLETLPSAPPSPPPPSPPPPRPPPPSPVPPTPPPSPRPPP----SPRP 514

>gb|AAC52865.1| neural variant mena++ protein [Mus musculus]
          Length = 787

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 27/52 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP  P  + PA    L PPPG  PP P  S+ PP PPP PPP P     P P
Sbjct: 531 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPP 582

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 25/73 (34%), Positives = 32/73 (43%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRLEI 314
           P +P  +  +    ++PPP      PAA   PP PPP PPPPP     P P        +
Sbjct: 402 PTAPNGSLDSVTYPVSPPP---TSGPAAPPPPPPPPP-PPPPPPLPPPPLP-------PL 450

Query: 313 GSLGHQRCALAPP 275
            SL H     +PP
Sbjct: 451 ASLSHCGSQASPP 463

 Score = 40.0 bits (92), Expect = 0.016
 Identities = 21/59 (35%), Positives = 25/59 (41%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRL 320
           PP  P    P       PPP   PP P  +  PP PPP PP P +   S +    +R L
Sbjct: 548 PPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAPPLPASGIFSGSTSEDNRPL 606

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
 Frame = -2

Query: 445 PPPGRRPPSPA-ASSQPPRP---PPRP-----PPPPTATASPAPD 338
           PPP   P  PA AS+ PP P   PP P     PPPP     P P+
Sbjct: 531 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPN 575

 Score = 30.8 bits (68), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 448 APPPGRRPPSPAASSQPPRPPPR---PPPPPTATASPAP 341
           APPP   PP P+  +     PP    PPPPP  +  P P
Sbjct: 529 APPPP--PPLPSGPAYASALPPPPGPPPPPPLPSTGPPP 565

>ref|NP_034265.1| enabled homolog; NPC derived proline rich protein 1 [Mus musculus]
           gi|30179826|sp|Q03173|ENAH_MOUSE Enabled protein homolog
           (NPC derived proline-rich protein 1) (NDPP-1)
           gi|1644461|gb|AAC52866.1| neural variant mena+++ protein
           [Mus musculus]
          Length = 802

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 27/52 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP  P  + PA    L PPPG  PP P  S+ PP PPP PPP P     P P
Sbjct: 546 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPP 597

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 25/73 (34%), Positives = 32/73 (43%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRLEI 314
           P +P  +  +    ++PPP      PAA   PP PPP PPPPP     P P        +
Sbjct: 417 PTAPNGSLDSVTYPVSPPP---TSGPAAPPPPPPPPP-PPPPPPLPPPPLP-------PL 465

Query: 313 GSLGHQRCALAPP 275
            SL H     +PP
Sbjct: 466 ASLSHCGSQASPP 478

 Score = 40.0 bits (92), Expect = 0.016
 Identities = 21/59 (35%), Positives = 25/59 (41%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRL 320
           PP  P    P       PPP   PP P  +  PP PPP PP P +   S +    +R L
Sbjct: 563 PPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAPPLPASGIFSGSTSEDNRPL 621

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
 Frame = -2

Query: 445 PPPGRRPPSPA-ASSQPPRP---PPRP-----PPPPTATASPAPD 338
           PPP   P  PA AS+ PP P   PP P     PPPP     P P+
Sbjct: 546 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPN 590

 Score = 30.8 bits (68), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 448 APPPGRRPPSPAASSQPPRPPPR---PPPPPTATASPAP 341
           APPP   PP P+  +     PP    PPPPP  +  P P
Sbjct: 544 APPPP--PPLPSGPAYASALPPPPGPPPPPPLPSTGPPP 580

>gb|AAC52863.1| mena protein [Mus musculus]
          Length = 541

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 27/52 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP  P  + PA    L PPPG  PP P  S+ PP PPP PPP P     P P
Sbjct: 285 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPP 336

 Score = 40.0 bits (92), Expect = 0.016
 Identities = 21/59 (35%), Positives = 25/59 (41%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRL 320
           PP  P    P       PPP   PP P  +  PP PPP PP P +   S +    +R L
Sbjct: 302 PPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAPPLPASGIFSGSTSEDNRPL 360

 Score = 32.3 bits (72), Expect = 3.3
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
 Frame = -2

Query: 445 PPPGRRPPSPA-ASSQPPRP---PPRP-----PPPPTATASPAPD 338
           PPP   P  PA AS+ PP P   PP P     PPPP     P P+
Sbjct: 285 PPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPN 329

 Score = 30.8 bits (68), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 448 APPPGRRPPSPAASSQPPRPPPR---PPPPPTATASPAP 341
           APPP   PP P+  +     PP    PPPPP  +  P P
Sbjct: 283 APPPP--PPLPSGPAYASALPPPPGPPPPPPLPSTGPPP 319

>ref|XP_341166.1| similar to mena protein [Rattus norvegicus]
          Length = 820

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 25/52 (48%), Positives = 27/52 (51%)
 Frame = -2

Query: 496 PP*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAP 341
           PP  P  + PA    L PPPG  PP P  S+ PP PPP PPP P     P P
Sbjct: 532 PPPPPLPSGPAYASALPPPPGPPPPPPLPSAGPPPPPPPPPPLPNQVPPPPP 583

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 24/73 (32%), Positives = 32/73 (42%)
 Frame = -2

Query: 493 P*SPQAARPAARKRLAPPPGRRPPSPAASSQPPRPPPRPPPPPTATASPAPDS*DRRLEI 314
           P +P  +  +    ++PPP   P +P     PP PPP PPPPP     P P        +
Sbjct: 404 PTAPNGSLDSVTYPVSPPPTSGPAAPPPPPPPPPPPPPPPPPP-----PLP-------PL 451

Query: 313 GSLGHQRCALAPP 275
            SL H     +PP
Sbjct: 452 ASLSHCGSQASPP 464

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 23/64 (35%), Positives = 27/64 (41%), Gaps = 14/64 (21%)
 Frame = -2

Query: 487 SPQAARPAARKRLAPPPGRRPPSPA------ASSQPPRP---PPRP-----PPPPTATAS 350
           S  A  PA +  +  PP   PP P       AS+ PP P   PP P     PPPP     
Sbjct: 513 SQPAETPAPQGHVLGPPAPPPPPPLPSGPAYASALPPPPGPPPPPPLPSAGPPPPPPPPP 572

Query: 349 PAPD 338
           P P+
Sbjct: 573 PLPN 576



EST assemble image


clone accession position
1 LC017a09_r AV620060 1 497
2 MX034b03_r BP087419 20 401
3 MX034f12_r BP087444 20 382




Chlamydomonas reinhardtii
Kazusa DNA Research Institute