KCC002825A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002825A_C01 KCC002825A_c01
gagagagagagagaactagtctcgagtttttttttttttttttttcttgCCTTTCCTTTA
CACACTGTTGCTCTCCCAGAGCCAGCTACCCCGCTATGCTCTCCAGTCCGAGACAGTACC
TCCGCGGCAGTTCGGTGCCCTCTCCGCCTACCAGCTGCTGCGCTGCATCGCACACCCGTA
AGCCGTCCGTCTAAGCCCGCTCATGTTCCAGCATCACAACTCCTAACCTAAAAGGTGCTG
CCTCACAAGCTCAAACACACCCTACCTAGCTCTGCCGTATAAGCCTCGCTGGGCCCAACC
TAGACCAGGTCACGCTTAGCAGCCGTCTGCCTTGCGCGGTAGAGTCTTCCCGGCCACCAG
CGCCACACTGCTGCCTCCAGCTCCCCACACACCCACATACACATGCCGCCTCCTCGACTG
CCGCTGGGCGCCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002825A_C01 KCC002825A_c01
         (434 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_651286.1| CG6892-PA [Drosophila melanogaster] gi|7301206|...    36  0.14
dbj|BAC85839.1| unnamed protein product [Homo sapiens]                 35  0.18
dbj|BAB71022.1| unnamed protein product [Homo sapiens]                 34  0.40
gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni]         34  0.40
emb|CAA74311.1| thrombomucin [Gallus gallus]                           34  0.40

>ref|NP_651286.1| CG6892-PA [Drosophila melanogaster] gi|7301206|gb|AAF56337.1|
           CG6892-PA [Drosophila melanogaster]
          Length = 613

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 21/92 (22%), Positives = 36/92 (38%)
 Frame = +3

Query: 129 SSVPSPPTSCCAASHTRKPSV*ARSCSSITTPNLKGAASQAQTHPT*LCRISLAGPNLDQ 308
           S +P PP  CC        S    + +++   +  G++S      + LC +++ G   D+
Sbjct: 182 SPIPPPPPPCCLTLGESSSSPNPIATAALMNASTSGSSSAGGASAS-LCNVNVKGVRHDR 240

Query: 309 VTLSSRLPCAVESSRPPAPHCCLQLPTHPHTH 404
            +    +P        P PH       HPH H
Sbjct: 241 TSSFFDIPAVTHPHNHPHPH------PHPHPH 266

>dbj|BAC85839.1| unnamed protein product [Homo sapiens]
          Length = 125

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 20/47 (42%), Positives = 25/47 (52%)
 Frame = +3

Query: 240 ASQAQTHPT*LCRISLAGPNLDQVTLSSRLPCAVESSRPPAPHCCLQ 380
           +S   THPT L       P    +TL+S  PC+V S + PAPH  LQ
Sbjct: 43  SSHTLTHPTTLTHFQ--NPPTLTLTLASPFPCSVTSLQVPAPHSLLQ 87

>dbj|BAB71022.1| unnamed protein product [Homo sapiens]
          Length = 518

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 34/121 (28%), Positives = 49/121 (40%)
 Frame = +3

Query: 63  HCCSPRASYPAMLSSPRQYLRGSSVPSPPTSCCAASHTRKPSV*ARSCSSITTPNLKGAA 242
           H  +P  + P    SPRQ      V +P +S     H  K S    S S++  P    A+
Sbjct: 169 HLTTPHPTSPL---SPRQPTSTHPVATPTSS--GHDHLMKIS---SSSSTVAIPGYTFAS 220

Query: 243 SQAQTHPT*LCRISLAGPNLDQVTLSSRLPCAVESSRPPAPHCCLQLPTHPHTHAASSTA 422
               T                Q+  SS  P + E+ +P +P   L+ PT P T ++S TA
Sbjct: 221 PGMTTTLPSSVISQRTQQTSSQMPASSTAPSSQETVQPTSPATALRTPTLPETMSSSPTA 280

Query: 423 A 425
           A
Sbjct: 281 A 281

>gb|AAC47557.1| insect intestinal mucin IIM22 [Trichoplusia ni]
          Length = 807

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 29/124 (23%), Positives = 45/124 (35%), Gaps = 1/124 (0%)
 Frame = +1

Query: 64  TVALPE-PATPLCSPVRDSTSAAVRCPLRLPAAALHRTPVSRPSKPAHVPASQLLT*KVL 240
           T A+PE P T   +P    T+A    P   P  A+   P +  S P   P +        
Sbjct: 570 TTAVPEIPITVTSAPTAAPTAAPTAAPTAAPTTAVPEIPTTVTSPPTAAPTT-------- 621

Query: 241 PHKLKHTLPSSAV*ASLGPT*TRSRLAAVCLAR*SLPGHQRHTAASSSPHTHIHMPPPRL 420
                   P+     ++ PT   +  A       + P     T A+ +P+T + +PP   
Sbjct: 622 ------AAPAPNTTVTVPPTAAPTTAAPAPNTTVTAPPTAAPTTAAPAPNTTVTVPPTAA 675

Query: 421 PLGA 432
           P  A
Sbjct: 676 PTAA 679

>emb|CAA74311.1| thrombomucin [Gallus gallus]
          Length = 571

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = +3

Query: 84  SYPAMLSSPRQYLR--GSSVPSPPTSCCAASHTRKPSV*ARSCSSITTPNLKGAASQAQT 257
           S PA+  +P Q  +  G    +   S  + S +++ S  A +    TT  +  +A+Q + 
Sbjct: 111 STPALTHTPDQNTKTTGRQDDTSHVSVASTSASQQVSSSASAAVPTTTSAVTSSATQQKV 170

Query: 258 HPT*LCRISL---AGPNLDQVTLSSRLPCAVESSRPPAPH 368
            PT    I L   A PN  QVT  SR P    S+   +PH
Sbjct: 171 SPTDSSEILLKPSASPNSTQVTSPSRTPKGFLSTVTTSPH 210



EST assemble image


clone accession position
1 LC016h01_r AV620045 1 434
2 MX218h03_r BP090104 50 423




Chlamydomonas reinhardtii
Kazusa DNA Research Institute