Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002824A_C01 KCC002824A_c01
(532 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis th... 140 8e-53
gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa] 128 2e-48
ref|XP_329991.1| hypothetical protein [Neurospora crassa] gi|289... 100 2e-40
ref|NP_004809.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; prp2... 103 5e-38
gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo s... 103 5e-38
>ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
gi|25408302|pir||H84748 hypothetical protein At2g33730
[imported] - Arabidopsis thaliana
gi|1707017|gb|AAC69128.1| putative U5 small nuclear
ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|17473908|gb|AAL38370.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|20259792|gb|AAM13243.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana]
Length = 733
Score = 140 bits (353), Expect(2) = 8e-53
Identities = 66/118 (55%), Positives = 89/118 (74%)
Frame = +3
Query: 3 MPKSTLKPDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDN 182
MP S LKP+ E L+E + YRTTYMFSATMPP VERLA+KYLR PVVV IG+AG+ TD
Sbjct: 491 MPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDL 550
Query: 183 VTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHG 356
++Q V ++KE+EK L++ L+ + EK IVFVNT++ CD++ +++D+ GY T LHG
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHG 608
Score = 88.6 bits (218), Expect(2) = 8e-53
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +1
Query: 361 KTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGR 531
K+Q+QRE ++GFR YNVL+ATDV GRGID+PDVA V+NYDMP +IE YTHRIGR
Sbjct: 610 KSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGR 666
>gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa]
Length = 736
Score = 128 bits (321), Expect(2) = 2e-48
Identities = 63/118 (53%), Positives = 82/118 (69%)
Frame = +3
Query: 3 MPKSTLKPDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDN 182
MP S LKP+ E L+ YRTTYMFSATMPPAVERLA+KYLR PVVV IG+AG+ TD
Sbjct: 493 MPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDL 552
Query: 183 VTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHG 356
+TQ V + KE+EK L++ L ++ +K IVF NT++ D + +D+ G+ T LHG
Sbjct: 553 ITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHG 610
Score = 85.9 bits (211), Expect(2) = 2e-48
Identities = 37/57 (64%), Positives = 49/57 (85%)
Frame = +1
Query: 361 KTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGR 531
K+Q+QRE + GFR+ + VL+ATDVAGRGID+PDVA V+NY+MP++I+ YTHRIGR
Sbjct: 612 KSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGR 668
>ref|XP_329991.1| hypothetical protein [Neurospora crassa] gi|28926242|gb|EAA35223.1|
hypothetical protein [Neurospora crassa]
Length = 728
Score = 100 bits (250), Expect(2) = 2e-40
Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 10/128 (7%)
Frame = +3
Query: 3 MPKSTLKPDEEGA--------VLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIG 158
MP + KPD + A ++ YR T M++ATMPP VER+AKKYLRRP +V IG
Sbjct: 471 MPVTNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIG 530
Query: 159 SAGRVTDNVTQRV-FVVKENEKGRLLEQELNNVDEK-RVIVFVNTQRQCDNVHRHMDELG 332
+AG D V QRV FV E+++ + L++ LN+ K +IVFVN +R CD V R + +G
Sbjct: 531 NAGEAVDTVEQRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMG 590
Query: 333 YHCTILHG 356
Y LHG
Sbjct: 591 YSAVTLHG 598
Score = 86.7 bits (213), Expect(2) = 2e-40
Identities = 39/57 (68%), Positives = 50/57 (87%)
Frame = +1
Query: 361 KTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGR 531
KTQ+QREA + R+G ++L+ATD+AGRGIDVPDV+LVVN++M TNIE+YTHRIGR
Sbjct: 600 KTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR 656
>ref|NP_004809.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; prp28, U5 snRNP 100 kd
protein [Homo sapiens] gi|2655202|gb|AAB87902.1| U5
snRNP 100 kD protein [Homo sapiens]
Length = 820
Score = 103 bits (257), Expect(2) = 5e-38
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Frame = +3
Query: 3 MPKSTLKPDEEGAVLEEN---------RTYRTTYMFSATMPPAVERLAKKYLRRPVVVVI 155
MP S KPD + A E YR T MF+ATMPPAVERLA+ YLRRP VV I
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 156 GSAGRVTDNVTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGY 335
GSAG+ + V Q+VF++ E+EK + L L + +I+FVN ++ CD + + ++++GY
Sbjct: 630 GSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGY 689
Query: 336 HCTILHG 356
+ LHG
Sbjct: 690 NACTLHG 696
Score = 75.9 bits (185), Expect(2) = 5e-38
Identities = 34/57 (59%), Positives = 44/57 (76%)
Frame = +1
Query: 361 KTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGR 531
K Q+QRE + + G ++L+ATDVAGRGID+ DV++VVNYDM NIE+Y HRIGR
Sbjct: 698 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGR 754
>gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
Length = 820
Score = 103 bits (257), Expect(2) = 5e-38
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Frame = +3
Query: 3 MPKSTLKPDEEGAVLEEN---------RTYRTTYMFSATMPPAVERLAKKYLRRPVVVVI 155
MP S KPD + A E YR T MF+ATMPPAVERLA+ YLRRP VV I
Sbjct: 570 MPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYI 629
Query: 156 GSAGRVTDNVTQRVFVVKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGY 335
GSAG+ + V Q+VF++ E+EK + L L + +I+FVN ++ CD + + ++++GY
Sbjct: 630 GSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGY 689
Query: 336 HCTILHG 356
+ LHG
Sbjct: 690 NACTLHG 696
Score = 75.9 bits (185), Expect(2) = 5e-38
Identities = 34/57 (59%), Positives = 44/57 (76%)
Frame = +1
Query: 361 KTQDQREAGIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGR 531
K Q+QRE + + G ++L+ATDVAGRGID+ DV++VVNYDM NIE+Y HRIGR
Sbjct: 698 KGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGR 754
