KCC002818A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002818A_C01 KCC002818A_c01
cggCAAAGTTCCTGTTACACCTGTGTTAGTTCACATCACAGCTGCACCACCAGGCTAAAT
ACGATGCTGTGCGCCTTGCAGCGTGGTTACCAAGAGCATTTCCGTTCGAGCCACAATCCA
AACCGTTGGCCAACCTTAACTAGAGTGTAAGGCCTGTGGGGCAACCTAACCAGATTTATA
TCACCATGCTCACGAGCAGCACCTGGCCGCACTGCGCCTGCAGCGGCACACCAGGTCCCT
ACCTCTTTGCCGCCACAGTCATTTATCGTCGCTTGGTCCACACCGCTCCTCCGCAGCAAC
CCAGCACCGACCTGCCCCGCAGCTCAACCCTCTGCGTTGTGTAACTCGCATACTGATACA
GACCTACATACCCTGGCGCCGGTTTGGCGCCATCCAACTCTCAGGTGGTACAGTATCCTC
AACACAATTGGTACAGCACCTTGCTTGGTACATGCTTTGGTTGAATACACCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002818A_C01 KCC002818A_c01
         (473 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB15517.1| unnamed protein product [Homo sapiens]                 40  0.018
ref|NP_888377.1| putative exported protein [Bordetella bronchise...    39  0.024
dbj|BAC65723.1| mKIAA1096 protein [Mus musculus]                       38  0.069
ref|NP_203744.1| molecule interacting with Rab13; MICAL-like 1 [...    36  0.20
ref|XP_039236.6| similar to molecule interacting with Rab13 [Hom...    36  0.20

>dbj|BAB15517.1| unnamed protein product [Homo sapiens]
          Length = 241

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 27/66 (40%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
 Frame = +1

Query: 211 TAPAAAHQVPTSLPPQSFIVAWSTPLLRSNPAPTCPAAQPSALCNSHT----DTDLHTLA 378
           TAP A  QV    PP  F+  WS   LRS P PTCP ++P  L  S +     ++ H L 
Sbjct: 9   TAPGAGAQVIRQ-PPPPFLCQWS---LRSVPCPTCP-SRPRLLVPSTSFPLLPSNSHPLC 63

Query: 379 PVWRHP 396
           P W  P
Sbjct: 64  PPWAEP 69

>ref|NP_888377.1| putative exported protein [Bordetella bronchiseptica]
           gi|33568417|emb|CAE32329.1| putative exported protein
           [Bordetella bronchiseptica]
          Length = 155

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 26/77 (33%), Positives = 34/77 (43%)
 Frame = +1

Query: 106 SSHNPNRWPTLTRV*GLWGNLTRFISPCSRAAPGRTAPAAAHQVPTSLPPQSFIVAWSTP 285
           ++H+  R+     + GL         P   AAP   APA A   P S  P S   A   P
Sbjct: 2   TTHDLPRFLLCAALAGLAAGAAAQTHPPLTAAPAAPAPAPASPAPASPAPASPAPAAERP 61

Query: 286 LLRSNPAPTCPAAQPSA 336
           ++R   AP  PAA P+A
Sbjct: 62  VVRQVAAPAAPAAAPAA 78

>dbj|BAC65723.1| mKIAA1096 protein [Mus musculus]
          Length = 1153

 Score = 37.7 bits (86), Expect = 0.069
 Identities = 26/55 (47%), Positives = 33/55 (59%), Gaps = 4/55 (7%)
 Frame = +1

Query: 184 PCSRAAPGRTAPAAAHQVPTSLPPQSFIVAWSTPLLR-SNPAP---TCPAAQPSA 336
           P S +APG TAPAAA   P S P    I+A +T L+  S PAP   +CPA  P++
Sbjct: 817 PVSSSAPGLTAPAAA--APASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTS 869

>ref|NP_203744.1| molecule interacting with Rab13; MICAL-like 1 [Homo sapiens]
           gi|30173085|sp|Q8N3F8|MI13_HUMAN Molecule interacting
           with Rab13 (MIRab13) gi|27803369|emb|CAD42713.1|
           molecule interacting with Rab13 [Homo sapiens]
           gi|31044215|tpg|DAA01345.1| TPA: MICAL-like 1 [Homo
           sapiens]
          Length = 863

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +1

Query: 196 AAPG-RTAPAAAH--QVPTSLPPQSFIVAWSTPLLRSNPAPTCPAAQPSALCN---SHTD 357
           AAP   T+PA  H    P SL P   I   S+P  +  PAP  P+A P AL     SH++
Sbjct: 440 AAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSE 499

Query: 358 TDLHTLAPVWRHPTLRWYSILNTIG 432
               T +P     +L   S   T G
Sbjct: 500 PPSATPSPALSVESLSSESASQTAG 524

>ref|XP_039236.6| similar to molecule interacting with Rab13 [Homo sapiens]
          Length = 675

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +1

Query: 196 AAPG-RTAPAAAH--QVPTSLPPQSFIVAWSTPLLRSNPAPTCPAAQPSALCN---SHTD 357
           AAP   T+PA  H    P SL P   I   S+P  +  PAP  P+A P AL     SH++
Sbjct: 440 AAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLALHASRLSHSE 499

Query: 358 TDLHTLAPVWRHPTLRWYSILNTIG 432
               T +P     +L   S   T G
Sbjct: 500 PPSATPSPALSVESLSSESASQTAG 524



EST assemble image


clone accession position
1 LC027e06_r AV620838 1 493
2 LC015h11_r AV619991 14 523
3 LCL038d11_r AV628209 54 168




Chlamydomonas reinhardtii
Kazusa DNA Research Institute