KCC002815A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002815A_C01 KCC002815A_c01
gagagagaGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTCAATCTGGATTGTTACA
TCATGCACCTTCTTGCGTCCTCCTCCATACCTTCCCGCTTGCTTTAGTGTACGCATACCG
TATACTCTACATATTGTATCTACCGCGCGTCTGCAGGCACTCCCAGCACTTGGTACGGCC
GCATCACGGTACGTCTCTATTTCTCTTCTCTAGACGGCGGCCAATCTGTCCGCCGGTGCG
TATACCTAAGACCCCTTCGTATCCGCTCTGGATCGATCAGTATCATCTCGGGAAACGCAC
TATAGAAACACATTCACACGTCACGCATCCACTCATCAAGGCGCGCTCACACTCAACAAT
CAATGAAACCGACAATTACATACGCGTTCACAAAACTTTTTGAGGTCAATCTTCAGTTCC
TGTGTGTATGTGTTGGTTGCAAGCGCGATGATCCTGCAGGAGGGCTGCCACGCAGGCTTC
AGCCCCCGCTGGCCCCCACACGCAGGTGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002815A_C01 KCC002815A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP30991.1| melanocortin-1 receptor [Callithrix pygmaea]            35  0.71
gb|AAP30993.1| melanocortin-1 receptor [Callithrix geoffroyi]          35  0.71
gb|AAP30992.1| melanocortin-1 receptor [Callithrix argentata]          35  0.71
gb|AAP30994.1| melanocortin-1 receptor [Callithrix jacchus]            35  0.71
gb|AAP30970.1| melanocortin-1 receptor [Cercopithecus neglectus]       35  0.71

>gb|AAP30991.1| melanocortin-1 receptor [Callithrix pygmaea]
          Length = 344

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 14  LVSSFFFFFFQSGLLHHAPSCVLLHTFPLALVYAYRILYILYLPRVCRHSQHLVRPHH 187
           L S+ F  ++      HA   + L  F LA++    +LY+  L R C+H+Q ++R H+
Sbjct: 174 LSSTLFITYYD-----HAAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIIRLHN 226

>gb|AAP30993.1| melanocortin-1 receptor [Callithrix geoffroyi]
          Length = 344

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 14  LVSSFFFFFFQSGLLHHAPSCVLLHTFPLALVYAYRILYILYLPRVCRHSQHLVRPHH 187
           L S+ F  ++      HA   + L  F LA++    +LY+  L R C+H+Q ++R H+
Sbjct: 174 LSSTLFITYYD-----HAAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIIRLHN 226

>gb|AAP30992.1| melanocortin-1 receptor [Callithrix argentata]
          Length = 344

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 14  LVSSFFFFFFQSGLLHHAPSCVLLHTFPLALVYAYRILYILYLPRVCRHSQHLVRPHH 187
           L S+ F  ++      HA   + L  F LA++    +LY+  L R C+H+Q ++R H+
Sbjct: 174 LSSTLFITYYD-----HAAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIIRLHN 226

>gb|AAP30994.1| melanocortin-1 receptor [Callithrix jacchus]
          Length = 344

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 14  LVSSFFFFFFQSGLLHHAPSCVLLHTFPLALVYAYRILYILYLPRVCRHSQHLVRPHH 187
           L S+ F  ++      HA   + L  F LA++    +LY+  L R C+H+Q ++R H+
Sbjct: 174 LSSTLFITYYD-----HAAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIIRLHN 226

>gb|AAP30970.1| melanocortin-1 receptor [Cercopithecus neglectus]
          Length = 317

 Score = 34.7 bits (78), Expect = 0.71
 Identities = 19/56 (33%), Positives = 27/56 (47%)
 Frame = +2

Query: 17  VSSFFFFFFQSGLLHHAPSCVLLHTFPLALVYAYRILYILYLPRVCRHSQHLVRPH 184
           V+S  F         HA   + L  F LA++    +LYI  L R C+H+Q + R H
Sbjct: 170 VASVLFSMLFIAYYDHAAVLLCLVVFFLAMLVLMAVLYIHMLARACQHAQGIARLH 225



EST assemble image


clone accession position
1 LC015e10_r AV619958 1 510
2 LC033h02_r AV621283 9 492




Chlamydomonas reinhardtii
Kazusa DNA Research Institute