KCC002813A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002813A_C01 KCC002813A_c01
catgcgttgaagcaagtagttggaggcctcatggggccgcatctttgcggcattttcgtc
aaaggcgacggcacacatctATTGCGGACTGCAATTGAACTGCAGAGGCGTGGCGTGGCG
AGTGAACATACGGCGTGGCATGCGTGTCTTTGCACAGAATTTCGCGCGGAGCGCGCACAT
AAGCATAAAACTACCCAAAAAGTAGATCAGGATCAGAGCTTGGCGGTGAACGCGGATGGA
GGCGCGTTGTTTGTCGTGTGACGTGAGCCGGTTGGTTCGTATGCGTATGGAGCGGGTGGG
ACTGAGCCAAATGATCTAGACAGTCTGCGGAGGAACTGAGCGGAAGGGTGGATTCTAATG
GCGAGTCAGGGCTTGGGGTGGTGTGGCGCACACTCAGTTGCAACAGTGCGGCTGGACTTC
AAGGGGGCATTCGCGCACATCCACACATCCGATGTTTGCATGGCTGTGTCCTTCGAGTTC
CTCCGGGTGCCTTATGTGCGTGGTGTTAAAAGTGGGGTGGCACGGAGTCAGGTATAGTCC
TGCCAGCCGCGAATGTGCGTGTGCGGATGTGCGTGTGCAATCTGGCGTGTGTCTTAGCGT
TTGTCATCGAGACCTGCGGCGGTGGCCTCTTGCCCCTGACCGGGCTGAATATCAAAATAT
TGAGTGTGTACGTAGGAGGCACCGAGACCAGCTGTACACGGAAACTCCTCCGCAAAAGTG
TGCGCGTGTGTTTTCGAGTTTTAATTGTTGTGTCACCCATATTGATCATCCAAAACGTAA
AAAGTGTCCAGGGACCACAGATGGGCGGCGTAGGCCTTGCTCCCTTCCCGTGTngtttgg
tggtgcgtaaaacg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002813A_C01 KCC002813A_c01
         (854 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 37  0.32
pir||T18318 hypothetical protein L7610.9 - Leishmania major            36  0.92
ref|ZP_00059553.1| COG0215: Cysteinyl-tRNA synthetase [Thermobif...    36  0.92
ref|NP_173940.1| protein kinase family [Arabidopsis thaliana] gi...    34  3.5
gb|AAL65133.2| ovarian cancer related tumor marker CA125 [Homo s...    34  3.5

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 37.4 bits (85), Expect = 0.32
 Identities = 56/220 (25%), Positives = 72/220 (32%), Gaps = 13/220 (5%)
 Frame = -2

Query: 730 HTRTLLRRSFRVQLVSVPPTYTLNILIFSPVRGKRPPPQVSMTNAKTHARLHTHIRTRTF 551
           HT T   R+ R+      PT +   L  +P R   P P        TH  +HTHI   T 
Sbjct: 30  HTCTHNARAHRLT-----PTCSHTCLCNAPTRQIAPTP--------THLHIHTHICPHTL 76

Query: 550 AAGRTIPD--SVPPHF*HHAHK-------APGGTRRTQPCKHRMCGCARMPP*SPAALLQ 398
           +   T     S   H   H H        AP     +  C H            P     
Sbjct: 77  SLSHTPTQCTSSHSHTCSHTHSLTCPHTLAPTRHTHSHACTH------------PHVQTH 124

Query: 397 LSVRHTTPSPDSPLESTLPLSSSADCLDHLAQSHPLHTHTNQPAHVTRQTTRLHPRSPPS 218
            +  +T  +       T   S       H A SHP +  T+  AH  R T   H RS P 
Sbjct: 125 TASAYTFTTHSHTPGHTHSCSHLIHTHSH-AHSHPPNAPTHTHAHTLRPTYCPHTRSHPM 183

Query: 217 SDPDLLFG*FYAYVRAPREILCKDTHATP----YVHSPRH 110
               L+           R +    TH TP    +VH+P H
Sbjct: 184 HLLTLI-----------RPLTPAHTHLTPGSHTHVHTPAH 212

 Score = 34.3 bits (77), Expect = 2.7
 Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 5/166 (3%)
 Frame = -2

Query: 592 THARLHTHIRTRTFAAGRTIPDSVPPHF*HHAHKAPGGTRRTQPCKHRMCGCARMPP*SP 413
           +HA  H H++T T +A           F  H+H  PG T       H        PP +P
Sbjct: 113 SHACTHPHVQTHTASAYT---------FTTHSH-TPGHTHSCSHLIHTHSHAHSHPPNAP 162

Query: 412 AALLQLSVR-----HTTPSPDSPLESTLPLSSSADCLDHLAQSHPLHTHTNQPAHVTRQT 248
                 ++R     HT   P   L    PL+ +     H   +   HTH + PAH     
Sbjct: 163 THTHAHTLRPTYCPHTRSHPMHLLTLIRPLTPA-----HTHLTPGSHTHVHTPAHTPHTR 217

Query: 247 TRLHPRSPPSSDPDLLFG*FYAYVRAPREILCKDTHATPYVHSPRH 110
           +  H      +        + +Y   P  + C  +H     H+P H
Sbjct: 218 SHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSH----THAPAH 259

>pir||T18318 hypothetical protein L7610.9 - Leishmania major
          Length = 148

 Score = 35.8 bits (81), Expect = 0.92
 Identities = 22/80 (27%), Positives = 37/80 (45%), Gaps = 1/80 (1%)
 Frame = -2

Query: 475 RRTQPCKHRMCGCARMPP*SPAALLQLSVRHTTPSPDSPLESTLPLSSSADCLDHLAQSH 296
           R  +  +  +C CA   P    A+  L   + TP+  SP   +LPLS     + +L+   
Sbjct: 14  RVRESARRELCSCAPPLPQGITAMTSLQTTYATPTISSP---SLPLSFRPLSIPYLSHGR 70

Query: 295 PLHTHTNQPAHV-TRQTTRL 239
             +THT+   H  T + +R+
Sbjct: 71  GAYTHTHAHTHTHTSEISRI 90

>ref|ZP_00059553.1| COG0215: Cysteinyl-tRNA synthetase [Thermobifida fusca]
          Length = 567

 Score = 35.8 bits (81), Expect = 0.92
 Identities = 24/67 (35%), Positives = 30/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 562 TRTFAAGRTIPD-SVPPHF*HHAHKAPGGTRRTQPCKHRMCGCARMPP*SP-AALLQLSV 389
           TR    GRT+PD     H  HH  +  GG  RT     +  G A +PP  P  A   L V
Sbjct: 98  TRQPGTGRTVPDRGRAEHAVHHPVRTSGGCCRTAQAVRKQTGKAAVPPTGPLGAADNLMV 157

Query: 388 RHTTPSP 368
             + P+P
Sbjct: 158 MRSWPAP 164

>ref|NP_173940.1| protein kinase family [Arabidopsis thaliana]
           gi|25403034|pir||F86387 probable Pto kinase interactor
           [imported] - Arabidopsis thaliana
           gi|12321185|gb|AAG50687.1|AC079829_20 Pto kinase
           interactor, putative [Arabidopsis thaliana]
          Length = 760

 Score = 33.9 bits (76), Expect = 3.5
 Identities = 44/164 (26%), Positives = 61/164 (36%), Gaps = 5/164 (3%)
 Frame = -2

Query: 682 VPPTYTLNILIFSPVRGKRPPPQVSMTNAKTHARLHTHIRTRTFAAGRTIPDSVPPHF*H 503
           VPP+++    + SP   + PPP   + +     R                  S PP    
Sbjct: 173 VPPSHSPPRHLPSPPASEIPPPPRHLPSPPASER-----------------PSTPPSDSE 215

Query: 502 HAHKAPGG--TRRTQPCKHRMCGCARMPP*SPAALLQLSVRHTTPSPDSPLESTLPLSSS 329
           H    P G   RR QP      G  R  P  P+     S R   PSP SP E TLP    
Sbjct: 216 HPSPPPPGHPKRREQPPPP---GSKRPTPSPPSP--SDSKRPVHPSPPSPPEETLPPPKP 270

Query: 328 ADCLDHLAQSHPLHTHTNQPAHVTRQTTRLHPRSPPS---SDPD 206
           +          PL ++++ P  +   ++ + P SPP    S PD
Sbjct: 271 S--------PDPLPSNSSSPPTLLPPSSVVSPPSPPRKSVSGPD 306

>gb|AAL65133.2| ovarian cancer related tumor marker CA125 [Homo sapiens]
          Length = 22152

 Score = 33.9 bits (76), Expect = 3.5
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
 Frame = -2

Query: 622  PPQVSMTNAKTH--ARLHTHIRTRTFAAGRT----------IPDSVPPHF*HHA--HKAP 485
            P  +SMT   +   ++  TH+ TR  A+  T          +P SV P     A     P
Sbjct: 606  PTGISMTGGSSTRGSQGTTHLLTRATASSETSADLTLATNGVPVSVSPAVSKTAAGSSPP 665

Query: 484  GGTRRTQPCKHRMCG------CARMPP*SPAALLQLSVRH--TTPSPDSP----LESTLP 341
            GGT+ +      +         +     +   L  L+ RH  ++P PDS     + +++P
Sbjct: 666  GGTKPSYTMVSSVIPETSSLQSSAFREGTSLGLTPLNTRHPFSSPEPDSAGHTKISTSIP 725

Query: 340  LSSSADCLDHLAQSHPLHTHTNQPAHVTRQTTRLHPRSPPSS 215
            L SSA  L+    +    +H    + +T  T  +  ++ PSS
Sbjct: 726  LLSSASVLEDKVSATSTFSHHKATSSITTGTPEISTKTKPSS 767



EST assemble image


clone accession position
1 LC064b07_r AV623464 1 504
2 LC015c04_r AV619935 332 854




Chlamydomonas reinhardtii
Kazusa DNA Research Institute