KCC002809A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002809A_C01 KCC002809A_c01
gcgcttcgtgctgctggagcccgtttGGGCGCTCGGCCCCTCGCGAACGGGTGGTCGGGC
AGGCGCGCTCTGGCCGTTCGTGCCCAGGCGGGCGCCAAGTCGGGCGACTACGTGCAGGTC
CACTACACGGGCACGCTCGATGACGGCAGCGTGTTCGACTCCTCCCGCGAGCGCGAGCCG
TTGGATTTCATCATCGGCGCGGGCAAGGTCATCAAGGGCTTCGACACTGCTGTGAGCGGC
CTGGTCGAGGGCGGCAAGCTGCAAGCAGCGCATTGAGCCCAAGGAGGCGTACGGGGAGAA
GGACCCCAACGCCGTCATCTCCGTGCCCATCAGCCAGGCGCCGGCGGGTCTGGAGGCGGG
CATGAAGGTCCAGCTGTCCAACGGCATGGTGGCTGCTGTGGCCAAGGTGGACAAGGAGTC
CGTGACCCTGGACCTGAACCACGAGCTGGCGGGCCAGGCGCTCACCTTTGACGTTGAGCT
CATGAAGCTGGTACCTAGTGAGCGCCTGCAGAAGGCCACCTTCGCAGCCGGCTGCTTCTG
GGGCCCGGAGCTGGCCTTCCAGCGTGTGCCCGGCGTGCTGTCCACCGAGGTGGGCTACAG
CAACGGCGAGGCCAAGGAGCCCACCTACGAGGAGGTGTGCGAGGGAACCACTGGCCACGC
GGAGGTCGTGCAGGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002809A_C01 KCC002809A_c01
         (676 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00129297.1| COG1047: FKBP-type peptidyl-prolyl cis-trans ...    76  4e-24
ref|NP_662773.1| peptidyl-prolyl cis-trans isomerase, FKBP-type ...    68  6e-18
gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis...    90  3e-17
ref|NP_194243.1| protein-methionine-S-oxide reductase [Arabidops...    90  3e-17
gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana] gi|24...    90  3e-17

>ref|ZP_00129297.1| COG1047: FKBP-type peptidyl-prolyl cis-trans isomerases 2
           [Desulfovibrio desulfuricans G20]
          Length = 161

 Score = 76.3 bits (186), Expect(2) = 4e-24
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = +1

Query: 97  KSGDYVQVHYTGTLDDGSVFDSSREREPLDFIIGAGKVIKGFDTAVSGLVEG 252
           K+GD V+VHYTGTLDDG+VFDSSR+REPL+F +G G +I GF+ A+ GL  G
Sbjct: 25  KNGDTVRVHYTGTLDDGTVFDSSRDREPLEFTMGEGMLIPGFEAALMGLAAG 76

 Score = 57.4 bits (137), Expect(2) = 4e-24
 Identities = 31/82 (37%), Positives = 51/82 (61%), Gaps = 5/82 (6%)
 Frame = +2

Query: 263 KQRIEPKEAYGEKDPNAVISVPISQAPAGL--EAGM--KVQLSNGMV-AAVAKVDKESVT 427
           K  I+P++AYGE +   +++V   Q P  +  E G+  +VQ   GM+   +  V  E V 
Sbjct: 80  KTTIQPEDAYGEPNDELILAVAREQVPDHITPEVGLMLQVQTEEGMMDVTITDVTDEQVV 139

Query: 428 LDLNHELAGQALTFDVELMKLV 493
           LD NH LAG++LTF++E+M+++
Sbjct: 140 LDANHPLAGESLTFEIEVMEVL 161

>ref|NP_662773.1| peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlorobium tepidum
           TLS] gi|21647916|gb|AAM73115.1| peptidyl-prolyl
           cis-trans isomerase, FKBP-type [Chlorobium tepidum TLS]
          Length = 142

 Score = 68.2 bits (165), Expect(2) = 6e-18
 Identities = 35/57 (61%), Positives = 39/57 (68%)
 Frame = +1

Query: 88  AGAKSGDYVQVHYTGTLDDGSVFDSSREREPLDFIIGAGKVIKGFDTAVSGLVEGGK 258
           A AK GD V VHYTGT DDG+VFDSS ER PL+  IG G VI GFD A+  +  G K
Sbjct: 2   AQAKKGDKVLVHYTGTYDDGTVFDSSVERGPLEVTIGTGMVIPGFDRALLDMEPGQK 58

 Score = 44.7 bits (104), Expect(2) = 6e-18
 Identities = 25/76 (32%), Positives = 43/76 (55%), Gaps = 6/76 (7%)
 Frame = +2

Query: 284 EAYGEKDPNAVISVPISQAPAG--LEAGMKVQLS----NGMVAAVAKVDKESVTLDLNHE 445
           +AYG +    +  VP  + PA   LE G ++QLS      ++  +  +   +VTLD NH 
Sbjct: 67  DAYGPRAEELIAEVPRERIPAEIPLEIGQQLQLSLADGGEVIVMIVDLTDTTVTLDANHP 126

Query: 446 LAGQALTFDVELMKLV 493
           +AG  L F++EL++++
Sbjct: 127 MAGLDLNFELELVEIL 142

>gb|AAM65092.1| protein-methionine-S-oxide reductase [Arabidopsis thaliana]
          Length = 258

 Score = 90.1 bits (222), Expect = 3e-17
 Identities = 42/62 (67%), Positives = 47/62 (75%)
 Frame = +2

Query: 491 VPSERLQKATFAAGCFWGPELAFQRVPGVLSTEVGYSNGEAKEPTYEEVCEGTTGHAEVV 670
           VPS   Q A F AGCFWG ELA+QRVPGV  TEVGYS+G    P+YE+VC GTTGH EVV
Sbjct: 86  VPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVV 145

Query: 671 QV 676
           +V
Sbjct: 146 RV 147

>ref|NP_194243.1| protein-methionine-S-oxide reductase [Arabidopsis thaliana]
           gi|12644314|sp|P54150|MSRA_ARATH Peptide methionine
           sulfoxide reductase (Protein-methionine-S-oxide
           reductase) (Peptide Met(O) reductase)
           gi|7446680|pir||T05534 protein-methionine-S-oxide
           reductase (EC 1.8.4.6) - Arabidopsis thaliana
           gi|4455256|emb|CAB36755.1| protein-methionine-S-oxide
           reductase [Arabidopsis thaliana]
           gi|7269363|emb|CAB79422.1| protein-methionine-S-oxide
           reductase [Arabidopsis thaliana]
          Length = 258

 Score = 90.1 bits (222), Expect = 3e-17
 Identities = 42/62 (67%), Positives = 47/62 (75%)
 Frame = +2

Query: 491 VPSERLQKATFAAGCFWGPELAFQRVPGVLSTEVGYSNGEAKEPTYEEVCEGTTGHAEVV 670
           VPS   Q A F AGCFWG ELA+QRVPGV  TEVGYS+G    P+YE+VC GTTGH EVV
Sbjct: 86  VPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVV 145

Query: 671 QV 676
           +V
Sbjct: 146 RV 147

>gb|AAK83645.1| AT4g25130/F13M23_270 [Arabidopsis thaliana]
           gi|24111327|gb|AAN46787.1| At4g25130/F13M23_270
           [Arabidopsis thaliana]
          Length = 258

 Score = 90.1 bits (222), Expect = 3e-17
 Identities = 42/62 (67%), Positives = 47/62 (75%)
 Frame = +2

Query: 491 VPSERLQKATFAAGCFWGPELAFQRVPGVLSTEVGYSNGEAKEPTYEEVCEGTTGHAEVV 670
           VPS   Q A F AGCFWG ELA+QRVPGV  TEVGYS+G    P+YE+VC GTTGH EVV
Sbjct: 86  VPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVV 145

Query: 671 QV 676
           +V
Sbjct: 146 RV 147



EST assemble image


clone accession position
1 LC046h02_r AV622229 1 517
2 LC034e06_r AV621332 27 560
3 MX256d11_r BP092596 91 422
4 LC014d04_r AV619874 234 686




Chlamydomonas reinhardtii
Kazusa DNA Research Institute