KCC002806A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002806A_C01 KCC002806A_c01
caggctgcgcaaaccagtacatggatatcaagtacacaagcatattaccaccagttaaaa
gtctcagaGAAGCCCAATTCCGCCTTCGGAAGCACTGCAACACCTAAACTCTTCGGGCGC
CACCCGGTCCTCCTTTACCAAAACCCTGGCCCTGGGCGCATCTCGTTACTTGGATCTAGC
GCATCTTGACTCAGAAGAAGGCGCAGCTCGCAGTCGCCTCGCCTCGCCTGTGCCTGTGCA
CGTGGCGGCCCCCCTAAAATGGCCGCCCCCGCGCCGCGCTTCAAGACGTTCGTGGAGTTC
TATCCCTTCTACCAGAGCCAGCACCGCCACCGTGGAACACGTGTCCTGCACCTGGTGGGC
ACGGGCATGGCGCTGCTGACGGCAGTGGCGGCGCTGGCCAGCCGGCGCCCGCGGCTGCTG
CTGCTGGTGCCCGTGCTGGGCTACGGCCCCGCCTGGGCCTCTCATGCACTGGTGGAGCGC
AACCGGCCCGCAACGTTCAACTATCCGCTGTGGTCGCTACTGGCTGACCTCCGGATGTTT
GTCAGCGTGCTGACGGGCCGGGAGCCGCTGGCAATGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002806A_C01 KCC002806A_c01
         (578 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP06841.1| unknown protein [Oryza sativa (japonica cultivar-...   103  1e-21
ref|NP_717227.1| conserved hypothetical protein [Shewanella onei...   103  2e-21
gb|AAO52198.1| similar to Pseudomonas putida KT2440. Conserved h...   101  7e-21
ref|XP_306848.1| ENSANGP00000000102 [Anopheles gambiae] gi|21289...    99  6e-20
ref|NP_791625.1| conserved hypothetical protein [Pseudomonas syr...    97  2e-19

>gb|AAP06841.1| unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|29893619|gb|AAP06873.1| unknown protein [Oryza sativa
           (japonica cultivar-group)]
          Length = 131

 Score =  103 bits (258), Expect = 1e-21
 Identities = 54/100 (54%), Positives = 63/100 (63%)
 Frame = +1

Query: 262 AAPAPRFKTFVEFYPFYQSQHRHRGTRVLHLVGTGMALLTAVAALASRRPRLLLLVPVLG 441
           AA +  F +  EF+ FY +QH   GTR  H +GT  AL  A+ A  S R   LL  PVLG
Sbjct: 8   AAASHGFGSMEEFWGFYLTQHSKPGTRRWHFLGTLAALACALLAAVSGRAAPLLAAPVLG 67

Query: 442 YGPAWASHALVERNRPATFNYPLWSLLADLRMFVSVLTGR 561
           YG AW SH  VE NRPATF +P+WS L DLRMF  +LTGR
Sbjct: 68  YGMAWYSHFFVEGNRPATFGHPVWSFLCDLRMFALILTGR 107

>ref|NP_717227.1| conserved hypothetical protein [Shewanella oneidensis MR-1]
           gi|24347399|gb|AAN54671.1|AE015607_12 conserved
           hypothetical protein [Shewanella oneidensis MR-1]
          Length = 101

 Score =  103 bits (257), Expect = 2e-21
 Identities = 48/95 (50%), Positives = 65/95 (67%)
 Frame = +1

Query: 277 RFKTFVEFYPFYQSQHRHRGTRVLHLVGTGMALLTAVAALASRRPRLLLLVPVLGYGPAW 456
           R+++F EFYPFY SQH+ R  R LH +G+ + L    AAL +    LL+L+P++GYG AW
Sbjct: 4   RYRSFAEFYPFYLSQHQDRRCRRLHFIGSMIVLALLGAALITTHWWLLVLIPLVGYGLAW 63

Query: 457 ASHALVERNRPATFNYPLWSLLADLRMFVSVLTGR 561
             H + ERNRPATF YPL+SL+ D  MF  +L G+
Sbjct: 64  VGHFVFERNRPATFQYPLYSLMGDWVMFAQILLGK 98

>gb|AAO52198.1| similar to Pseudomonas putida KT2440. Conserved hypothetical
           protein [Dictyostelium discoideum]
          Length = 104

 Score =  101 bits (252), Expect = 7e-21
 Identities = 45/94 (47%), Positives = 62/94 (65%)
 Frame = +1

Query: 280 FKTFVEFYPFYQSQHRHRGTRVLHLVGTGMALLTAVAALASRRPRLLLLVPVLGYGPAWA 459
           +  F EFYP+Y  +H +R  R LH VGT +  LT V AL + + R LLL  V GY  AWA
Sbjct: 8   YNNFKEFYPYYLKEHTNRTNRRLHFVGTTLGFLTIVYALLTGQYRYLLLALVFGYSFAWA 67

Query: 460 SHALVERNRPATFNYPLWSLLADLRMFVSVLTGR 561
            H  +E+N+PATF YP+WS   D++M+ S+L+G+
Sbjct: 68  GHFFIEKNKPATFKYPIWSFRGDMKMYSSILSGK 101

>ref|XP_306848.1| ENSANGP00000000102 [Anopheles gambiae] gi|21289796|gb|EAA01941.1|
           ENSANGP00000000102 [Anopheles gambiae str. PEST]
          Length = 100

 Score = 98.6 bits (244), Expect = 6e-20
 Identities = 42/98 (42%), Positives = 62/98 (62%)
 Frame = +1

Query: 271 APRFKTFVEFYPFYQSQHRHRGTRVLHLVGTGMALLTAVAALASRRPRLLLLVPVLGYGP 450
           A +   + +FY FY ++H+    R+LH  GT +  +    +L S +  LL  VPV+GYG 
Sbjct: 1   AQKIDNYKDFYNFYLTEHKDYTCRILHFTGTALVFILLFYSLFSEKYYLLWFVPVVGYGS 60

Query: 451 AWASHALVERNRPATFNYPLWSLLADLRMFVSVLTGRE 564
           AW  HA  E+N+PATF YPLWSL++D R+F  +L G++
Sbjct: 61  AWIGHAFFEKNKPATFTYPLWSLISDFRLFFELLIGKQ 98

>ref|NP_791625.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000] gi|28852246|gb|AAO55320.1| conserved
           hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 103

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 46/97 (47%), Positives = 60/97 (61%)
 Frame = +1

Query: 277 RFKTFVEFYPFYQSQHRHRGTRVLHLVGTGMALLTAVAALASRRPRLLLLVPVLGYGPAW 456
           RF +F EFYPFY ++H    +R LH VGT + +      + S R  LL L+PV GYG AW
Sbjct: 6   RFSSFAEFYPFYLAEHSSSTSRRLHFVGTSLVIFLLAFGVGSGRWGLLWLLPVAGYGFAW 65

Query: 457 ASHALVERNRPATFNYPLWSLLADLRMFVSVLTGREP 567
           A H   E+NRPATF +P +SLL D  M+  +L G+ P
Sbjct: 66  AGHFFFEKNRPATFKHPFYSLLGDFVMYRDMLLGKVP 102



EST assemble image


clone accession position
1 LC047b01_r AV621968 1 499
2 LC013h02_r AV619836 69 578




Chlamydomonas reinhardtii
Kazusa DNA Research Institute