KCC002805A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002805A_C01 KCC002805A_c01
cATTCACACTAGCTTACATTCCTATGTACGCAGGACTGCGGGCCGGGGCGTCCAGACCTA
CTGCAGACCAAGGCCCTTGGGAAGGGGTACGCGTCTCCGTGTTTCCTGCACGCCGGCTGA
CAACCTTTCGGACACGCACGCCAGCGCCGCCCACACTATCAACTTCGCAACGCCATACGA
CCCATGCGACCAATGACATGTCGACCATACAACCGCCACGCGCCAGAACAAGTCAGGACG
ACGTCATGTTTGATGCCGATAGCTTGTGTGACAGGCCGGAGGCTATGAATGGTCGCATAC
CAGGTAGTCATGCACCGGCACGGAAGTTCGTGCAATACCGTTGTGGGGGCCACACTTCAC
TCCCCCATCCTCATCCTGTGCTGTGCTTCATCAGCACTTCGTATGGGAAGACAAATTGCA
CGCACACACCAAGACACATGAACATCTTGTTTGCTTGTACATTTGCATGGACAGTGCCGG
CCCTTTCCCTTGTCCTCGCCTAACACGGACGTCTTGTCAGCCTGCAGAAACCATATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002805A_C01 KCC002805A_c01
         (537 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_214505.2| similar to F-box only protein 18 [Rattus norveg...    40  0.015
gb|AAH46950.1| Similar to complement component factor h [Xenopus...    39  0.033
pir||B86465 probable Protein kinase [imported] - Arabidopsis tha...    34  1.4
ref|NP_174673.2| leucine-rich repeat transmembrane protein kinas...    34  1.4
gb|AAH59307.1| Unknown (protein for MGC:68970) [Xenopus laevis]        33  1.8

>ref|XP_214505.2| similar to F-box only protein 18 [Rattus norvegicus]
          Length = 1025

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = +3

Query: 183 HATNDMS---TIQPPRARTSQDDVMFDADSLCDRPEAMNGRI----PGSHAPARK 326
           H TNDM+   ++     + S++D++F A+S C  P+  NG +    PGS  PARK
Sbjct: 70  HCTNDMAKSNSVGQDSCQDSENDMIFPAESSCSLPQVENGEVRLGSPGSAQPARK 124

>gb|AAH46950.1| Similar to complement component factor h [Xenopus laevis]
          Length = 502

 Score = 39.3 bits (90), Expect = 0.033
 Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
 Frame = +3

Query: 258 DSLCDRPEAMNGRI-PGSHAPARKFVQ--YRCGGHTSLPHPHPVLCFISTSYGKTNCT 422
           D +CDRP+  NG I  G++ PARK     Y C G+    +      +    YGK+ CT
Sbjct: 320 DKICDRPDLQNGMIYSGANFPARKNADLWYNCNGNFDPVYKETYRWYNRGEYGKSTCT 377

>pir||B86465 probable Protein kinase [imported] - Arabidopsis thaliana
           gi|10086466|gb|AAG12526.1|AC015446_7 Putative Protein
           kinase [Arabidopsis thaliana]
          Length = 1064

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 231 SQDDVMFDADSLCDRPEAMNGRIPGSHAPARKFVQYRCGGHTSLPHPHP 377
           SQ   +F    LC +   +NG IP S        Q+R GG+T+L  P P
Sbjct: 157 SQISNLFALQVLCLQDNLLNGSIPSSFGSLVSLQQFRLGGNTNLGGPIP 205

>ref|NP_174673.2| leucine-rich repeat transmembrane protein kinase, putative
           [Arabidopsis thaliana]
          Length = 1045

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 231 SQDDVMFDADSLCDRPEAMNGRIPGSHAPARKFVQYRCGGHTSLPHPHP 377
           SQ   +F    LC +   +NG IP S        Q+R GG+T+L  P P
Sbjct: 138 SQISNLFALQVLCLQDNLLNGSIPSSFGSLVSLQQFRLGGNTNLGGPIP 186

>gb|AAH59307.1| Unknown (protein for MGC:68970) [Xenopus laevis]
          Length = 831

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 23/75 (30%), Positives = 33/75 (43%)
 Frame = +3

Query: 153 TLSTSQRHTTHATNDMSTIQPPRARTSQDDVMFDADSLCDRPEAMNGRIPGSHAPARKFV 332
           T + +  H  H  +D +  QPP   TS+        +  ++P + NG  P S AP     
Sbjct: 349 TATGNGTHAGHMPSDGNAAQPPSTNTSEPQ----RPNTENQPPS-NGERPASDAPP---- 399

Query: 333 QYRCGGHTSLPHPHP 377
                  TS+PHPHP
Sbjct: 400 -------TSVPHPHP 407



EST assemble image


clone accession position
1 MX236e07_r BP091293 1 418
2 LC013g04_r AV619828 2 526
3 LC052h07_r AV622678 3 537




Chlamydomonas reinhardtii
Kazusa DNA Research Institute