KCC002798A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002798A_C01 KCC002798A_c01
ctgagccggcactcagcatgcgggacgtatgcggctgcacatgcaatcgtgtgtgtgccc
atgcgaggggctcgtgcggtCTGTCTGTGCTGTCTTGCGTCGCTGCGGCCGTATGGTTTG
TACAATATAAGCGGCCCTGGGGCTCGTGTGCGCCCCTGTGTGTTAGCGAGTGTGTACGGC
GATGGGCCTGGGTGTGGAACGTGAAGAGGTGATGCGGCTCCGTGCGCACGCCTTTTATAC
ACAAGCTGGTTTCTATGCAGACTGCAGGGCGCGGCACAATCAGGTGCACGTGCCAGTTGT
TGGTTTGCGCGTCATTTGTTTTCCTCTGATGGTGTCGGCCGGTTGGGTGCGTTGGGTGCG
TCGCCTGACGCGCGTGCCCGTACACGTTTGTTTGGTCGAGTGTGGTGGTATTCGACACAT
TGACGATGCTAAAGTTTCTACAATACAGACGGGTGAGAGGTCAGTATAATTCTTTGGTCA
GGCCTCGGGACACACAGACGACGTTGCAAAAAGTGACGGGACGCAAGGAAAACACCGGTC
AAGTCGCGTGTTGCGAAGCGGACCGCCGGCGGATTAGCGGGGCGCGTGGCACGGTATGTG
TGCACGGTGCCAAGACGTTGGCTTCTCGGTGTGCGGGTGGTGGCGCTTTGTGCTTGTCAT
GCAGAGCGAGTAGCGATAGTACGCATGGAAAGTCCCATGCATGGAGAGCGAGAGTTATGG
TAGGAGAAACAAACAAACCACAAGAAAGGCGTGCGCGGATGCGACGACCACACCGGCTGC
CATCCCCACGCCCGCACATGCCGGTTCACACATACTGTATTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002798A_C01 KCC002798A_c01
         (823 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 42  0.009
dbj|BAB71485.1| unnamed protein product [Homo sapiens]                 39  0.078
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    39  0.10
ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens]         38  0.17
ref|XP_061176.1| similar to contains similarity to phytocyanin/e...    31  0.30

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 42.4 bits (98), Expect = 0.009
 Identities = 42/143 (29%), Positives = 59/143 (40%), Gaps = 13/143 (9%)
 Frame = -1

Query: 400 LDQTNVYGHARQATHPTHPTGRHHQRKTNDAQTNNWHVHLI-VPRPAVCIETSLCIKGVR 224
           L  T+ + H+     PTH T  H  R T    T +  +HL+ + RP     T L   G  
Sbjct: 147 LIHTHSHAHSHPPNAPTH-THAHTLRPTYCPHTRSHPMHLLTLIRPLTPAHTHLT-PGSH 204

Query: 223 TEPHH-LFTFHTQAHRRT--HSLTHRGAHEPQ--------GRLYCT-NHTAAATQDSTDR 80
           T  H    T HT++H  T  + LTH   + P           L+C+ +HT A        
Sbjct: 205 THVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAHTHMLT 264

Query: 79  PHEPLAWAHTRLHVQPHTSRMLS 11
           PH  L   H+ +    HTS  L+
Sbjct: 265 PHHSLTHIHSHMIAPTHTSHTLA 287

>dbj|BAB71485.1| unnamed protein product [Homo sapiens]
          Length = 170

 Score = 39.3 bits (90), Expect = 0.078
 Identities = 37/141 (26%), Positives = 48/141 (33%), Gaps = 24/141 (17%)
 Frame = -1

Query: 376 HARQATHPTHPTGRHHQRKTNDAQTNNWHVHLIVPRPAVCIETSLCIKGVRTEPHHLFTF 197
           HA    H  H   RH   +T+  +  + HVH+            +C         H++T 
Sbjct: 30  HACTHVHTPH---RHALTRTDTPKHAHTHVHIYA-------HMQICTHANANMHAHMYTH 79

Query: 196 HTQ------------------AHRRTHSLTHRGAHE-PQGRLYCTNHTAAATQDST---- 86
           HT                    H  TH++TH   H   Q R Y T H  A T  +T    
Sbjct: 80  HTDTDMHSHTHAHTQTWTYTCTHTHTHAVTHVHMHAGTQTRTYTTLHKHAHTDTNTCAHT 139

Query: 85  -DRPHEPLAWAHTRLHVQPHT 26
               H     AHTR H   HT
Sbjct: 140 CTCTHTTHRHAHTRAHRHAHT 160

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 38.9 bits (89), Expect = 0.10
 Identities = 45/163 (27%), Positives = 54/163 (32%), Gaps = 8/163 (4%)
 Frame = -2

Query: 516  SLFATSSVCPEA*PKNYTDLSPVCIVETLASSMCRIPPHSTKQTCTGTRVRRRTQRTQPA 337
            S   TS+ CP       T  +P     T  S      P ST  TCT        + T   
Sbjct: 853  STTTTSTSCP-------TTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRSTTTT 905

Query: 336  DTIRGKQMTRKPTTGTCT--*LCRALQSA*KPACV*KACARSRITSSRSTPRPIAVHTR* 163
             T      T + TT TCT        +S  K +         R T++ ST RP     R 
Sbjct: 906  CTSCPTTTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRS 965

Query: 162  HTGAHTS------PRAAYIVQTIRPQRRKTAQTDRTSPSHGHT 52
             T   TS      PR+     T RP       T  TS S   T
Sbjct: 966  TTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTT 1008

 Score = 37.4 bits (85), Expect = 0.30
 Identities = 52/202 (25%), Positives = 68/202 (32%), Gaps = 4/202 (1%)
 Frame = -2

Query: 657 TSTKRHHPHTEKPTSWHRAHIPCHAPR*SAGGPLRNTRLDRCFPCVPSLFATSSVCPEA* 478
           T+T    P T  P    R+       R +   P   T    C P   +  +T++      
Sbjct: 244 TTTTTSRPTTTTP----RSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTS-- 297

Query: 477 PKNYTDLSPVCIVETLASSMCRIPPHSTKQTCTGTRVRRRTQRTQPADTIRGKQMTRKPT 298
               T  +P C   T   S  R  P ST  T T     R T  T    T      TR+PT
Sbjct: 298 --RPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTS----RPTTTTPRCTTTPSTTCTRRPT 351

Query: 297 TGT---CT*LCRALQSA*KPACV*KACARSRITSSRSTPRPIAVHTR*HTG-AHTSPRAA 130
           T T    T  C +  +   P      C     TS  +T  P +  T   +G   T+PR+ 
Sbjct: 352 TTTPRSTTTTCTSGPTTTTPRSTTTTC-----TSGPTTTTPRSTTTTSTSGPTTTTPRST 406

Query: 129 YIVQTIRPQRRKTAQTDRTSPS 64
               T  P       T  TS S
Sbjct: 407 TTTSTSGPTTTTPRSTTTTSTS 428

>ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens]
          Length = 299

 Score = 38.1 bits (87), Expect = 0.17
 Identities = 42/159 (26%), Positives = 57/159 (35%), Gaps = 40/159 (25%)
 Frame = -1

Query: 358 HPTHPTGRHHQRK---------TNDAQTNNWHV----------HLIVPRPAVCIETSLCI 236
           H  HP  RHH +K         ++  +T   HV          HL  PR    I+     
Sbjct: 70  HLAHPRTRHHMQKHTPRMSSHASSHTETYTLHVIARVITCKNIHLACPRTCHHIQKHTPC 129

Query: 235 KGVRTEPH---HLFTFHTQAHRRTHSLTHRGA--------------HEPQGRLYCTNHTA 107
               T PH   H  T  T +H  +H+ TH                 + P+   + ++HT 
Sbjct: 130 ----TSPHASSHKHTPRTSSHASSHAKTHLAQTYTLHVLARVITCKNTPRTSSHASSHTE 185

Query: 106 AATQDSTDR----PHEPLAWAHTRLHVQPHTSRMLSAGS 2
             T     R     +  LA   TR H+Q HT RM S  S
Sbjct: 186 TYTLHILARVITCKNTHLACPRTRHHMQKHTPRMSSHAS 224

 Score = 35.4 bits (80), Expect = 1.1
 Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 7/129 (5%)
 Frame = -1

Query: 376 HARQATHPTHPTGRH--HQRKTNDAQTNNWHVHLIVPRPAVCIETSLCIKGVRTEPH--- 212
           HA    H T  T  H     KT+ AQT   HV   + R   C  T       RT  H   
Sbjct: 133 HASSHKH-TPRTSSHASSHAKTHLAQTYTLHV---LARVITCKNTP------RTSSHASS 182

Query: 211 --HLFTFHTQAHRRTHSLTHRGAHEPQGRLYCTNHTAAATQDSTDRPHEPLAWAHTRLHV 38
               +T H  A   T   TH     P+ R +   HT   +  ++   H P   +H   H 
Sbjct: 183 HTETYTLHILARVITCKNTHLAC--PRTRHHMQKHTPRMSSHASSHKHTPCTSSHASSHA 240

Query: 37  QPHTSRMLS 11
           + +TS +L+
Sbjct: 241 KTYTSHVLA 249

>ref|XP_061176.1| similar to contains similarity to phytocyanin/early nodulin-like
           protein~gene_id:K19P17.3 [Homo sapiens]
          Length = 567

 Score = 31.2 bits (69), Expect(2) = 0.30
 Identities = 41/134 (30%), Positives = 50/134 (36%), Gaps = 16/134 (11%)
 Frame = -2

Query: 651 TKRHHPH-----TEKPTSWHRAHIPCHAPR*SAGG-----PLRNTRLDRCFPCVPSLFAT 502
           T+ H PH     T KPT    AH P H    S  G     P RN    R  P V +   +
Sbjct: 371 TETHSPHGSPQSTRKPTVHTEAHSPVHTEAHSPHGSSQSRPHRNPESTR-KPTVHTEAQS 429

Query: 501 SSVCPEA*PKNYTDLSPVCIVETLASSMCRIPPHSTKQTCTGTRVRR-RTQRTQP----A 337
               P++ P      +    V T A S      HS   +   TR  R  T+   P    A
Sbjct: 430 PHRSPQSSPHGSPQSTRKPTVHTEAHSPVHTEAHSPHGSPQSTRKPRVHTEAHSPVHMEA 489

Query: 336 DTIRGK-QMTRKPT 298
            +  G  Q TRKPT
Sbjct: 490 QSPHGSPQSTRKPT 503

 Score = 25.0 bits (53), Expect(2) = 0.30
 Identities = 18/64 (28%), Positives = 25/64 (38%), Gaps = 4/64 (6%)
 Frame = -1

Query: 202 TFHTQAHRRTHSLTHRGAHEPQGRLYCTNHTAAATQDSTD----RPHEPLAWAHTRLHVQ 35
           T H +AH   H+        PQ     T HT   +QD       R    L  A +++  Q
Sbjct: 503 TVHMEAHSPVHTEAQSPHGSPQYTRKPTVHTEVHSQDQPSKNMYRTLTSLGGARSKIRGQ 562

Query: 34  PHTS 23
            H+S
Sbjct: 563 RHSS 566



EST assemble image


clone accession position
1 LCL072f06_r AV630080 1 330
2 LC074h02_r AV624234 202 670
3 LC011b12_r AV619644 283 823




Chlamydomonas reinhardtii
Kazusa DNA Research Institute