KCC002797A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002797A_C01 KCC002797A_c01
cagGAGCTCTAGTGATACTCCAGCGACAACTTTAGGGAGGGTCTTCATTGCCACCACAAT
AACGGCTTTGACAGTTGCGACTTCTTTGCCGCCTTTCTCTACTTTCATCCTCCACATATA
TTATCCCCATTGAAATAGTCTGACCTACACGGACTAGCTTCGCTTTCTCTCGCCAAGGCA
CGCCTGCAGTTTTCATAACCGTCATACAGCGCCCAACTCGCTCCTAGATTTGAAATGGCA
CGCTCAGCAGTTTTCGCCGCCCTGGCTGTGGTCCTCATGGCCGTGGCATCAGAGGCGTCC
TACTTAACAGGGACCAAGTTCCCGTTTGAGAACTGCGTTCAAAACACCCAGTTCTCTCCT
TACTATGCCACCCTGGTCTCCTACTCTGAGAACGCGGTTAAGCAGACCAGCCAGATCTGT
CTTCAGCTGCACGTGGCGCCAACTTGCACCATTGGCCGCCGCGATGGCAAGCCCACGCGC
TGCTGCAACACCGCCATCAACAAGCTGAAGCTGTTCCCGGCCTTTGACTGCCGCGGCTCA
ATCGCCAGCGCCACCATTGCCAACAAGACCGTCACCAGCATCTACTGGGAGGAGCATGAG
GGCTTTGACATTGTCAAGGTGACCCCGCTGATGGAGTGGCTGTCCAGCCCCGCCGCCGTG
GACAACCAGGTCATCTGCCTCAACCTGCGCAACCCCTGCTGGACCATGGCCATGCTCTCG
TTTGACAAGGAGGTGCTGGAGTACGCCCTGTACGACAAGAAGGTGGACAACTACGAGTGC
TGCCCTGTGGGCCTGATGGATGTGACCTATGAGCCATTCAAGGGCACCCTGACCTCGGGC
CCCAGCGGCAGCGTGCAGATTGAGCCCGCCATGTCTGGCAGCCCCAAGCCCTCCCCCGTG
CCCAAGGCCCTCTCCCTCTCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002797A_C01 KCC002797A_c01
         (921 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission y...    55  2e-06
ref|NP_594758.1| wiskott-aldrich syndrome protein homolog 1 [Sch...    55  2e-06
pir||A43932 mucin 2 precursor, intestinal - human (fragments)          54  4e-06
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva...    54  4e-06
gb|AAA59163.1| mucin                                                   54  4e-06

>pir||T43556 Wiskott-Aldrich syndrome protein homolog - fission yeast
           (Schizosaccharomyces pombe) gi|2708709|gb|AAB92587.1|
           Wiskott-Aldrich Syndrome protein homolog
           [Schizosaccharomyces pombe]
          Length = 574

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 64/217 (29%), Positives = 85/217 (38%), Gaps = 9/217 (4%)
 Frame = +2

Query: 296 RPT*QGPSSRLRTAFKTPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASP 475
           +P    PSSR+  A    +     PP  P+ R R   P  +             ++ +S 
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGN------------GSSNSSL 336

Query: 476 RAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPP 655
                PP ++ + S PL    +S  PP P R +P STGR    L+ SR     S  PAPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP-STGRQPPPLSSSRAV---SNPPAPP 392

Query: 656 PWTTRSSA---------STCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*P 808
           P     SA         S  +TP  P P S       S P +       S  + A    P
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP----SAPPSLPPSAPPSLPMGAPAAPP 448

Query: 809 MSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSPS 919
           +  S    P  PA      P   AAP+PPP P P+P+
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485

>ref|NP_594758.1| wiskott-aldrich syndrome protein homolog 1 [Schizosaccharomyces
           pombe] gi|7493721|pir||T38819 wiskott-aldrich syndrome
           protein homolog 1 - fission yeast  (Schizosaccharomyces
           pombe) gi|2388986|emb|CAB11718.1| SPAC4F10.15c
           [Schizosaccharomyces pombe]
          Length = 574

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 64/217 (29%), Positives = 85/217 (38%), Gaps = 9/217 (4%)
 Frame = +2

Query: 296 RPT*QGPSSRLRTAFKTPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASP 475
           +P    PSSR+  A    +     PP  P+ R R   P  +             ++ +S 
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGN------------GSSNSSL 336

Query: 476 RAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPP 655
                PP ++ + S PL    +S  PP P R +P STGR    L+ SR     S  PAPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP-STGRQPPPLSSSRAV---SNPPAPP 392

Query: 656 PWTTRSSA---------STCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*P 808
           P     SA         S  +TP  P P S       S P +       S  + A    P
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP----SAPPSLPPSAPPSLPMGAPAAPP 448

Query: 809 MSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSPS 919
           +  S    P  PA      P   AAP+PPP P P+P+
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485

>pir||A43932 mucin 2 precursor, intestinal - human (fragments)
          Length = 3020

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 60/226 (26%), Positives = 85/226 (37%), Gaps = 5/226 (2%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWS----PTLRTRLSRPARSV 421
            SPP   ++ P     P    PS  + T    P+S  T+PP +    PT  T    P  + 
Sbjct: 1485 SPPTTTTTTP-----PPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTP 1539

Query: 422  FSCTWRQLAP-LAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSM 598
               T   + P  +     P    +PP T+ +   P T    +P+PP  T PSP +   + 
Sbjct: 1540 SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT----TPSPPTTTTPSPPTITTTT 1595

Query: 599  RALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTS 778
               T +         P+PP  TT +   T  TP+ P           +TP T    TTT 
Sbjct: 1596 PPPTTT---------PSPPTTTTTTPPPT-TTPSPPT----------TTPITPPTSTTTL 1635

Query: 779  AALWA*WM*PMSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSP 916
                     P + + +P P         +PP    PSPP    PSP
Sbjct: 1636 ---------PPTTTPSPPPTTTT-----TPPPTTTPSPPTTTTPSP 1667

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 61/221 (27%), Positives = 87/221 (38%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWSPTLRTRLSRPARSVFSCT 433
            SPP   ++ P     P    PS  + T   T + L T  P SP + T  + P  +  S  
Sbjct: 1423 SPPTTTTTTP-----PPTTTPSPPITT---TTTPLPTTTP-SPPISTTTTPPPTTTPS-- 1471

Query: 434  WRQLAPLAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTL 613
                 P     + P    +PP+T+ +   P T    +P+PP+ T  +P ++  ++   T 
Sbjct: 1472 -----PPTTTPSPPTTTPSPPTTTTTTPPPTT----TPSPPMTTPITPPASTTTLPPTTT 1522

Query: 614  SR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA 793
               P   +    PPP TT S  +T  TP  P P S  T    +TP      TTT      
Sbjct: 1523 PSPPT--TTTTTPPPTTTPSPPTT--TPITP-PTSTTTLPPTTTPSPPPTTTTTPP---- 1573

Query: 794  *WM*PMSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSP 916
                P +    P    P      SPP +   +PPP   PSP
Sbjct: 1574 ----PTTTPSPPTTTTP------SPPTITTTTPPPTTTPSP 1604

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 60/235 (25%), Positives = 88/235 (36%), Gaps = 13/235 (5%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWS----PTLRTRLSRPARSV 421
            SPP   ++ P     P    PS    T    P+S  T+PP +    P   T    P  + 
Sbjct: 1524 SPPTTTTTTP-----PPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1578

Query: 422  FSCTWRQLAPLAAAMASPRAAATP--PSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRS 595
               T    +P      +P    TP  P+T+ +   P T    +P+PP  T  +P ++  +
Sbjct: 1579 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTT----TPSPPTTTPITPPTSTTT 1634

Query: 596  MRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRW--- 766
            +   T           P+PPP TT +   T  TP+ P      T    S P TT      
Sbjct: 1635 LPPTTT----------PSPPPTTTTTPPPT-TTPSPP------TTTTPSPPITTTTTPPP 1677

Query: 767  -TTTSAALWA*WM*PMSHSRAP*PRAPAAA---CRLSPPCLAAPSPPPCPRPSPS 919
             TT S+ +      P +    P P    ++      +P     PSPPP    +PS
Sbjct: 1678 TTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPS 1732

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 56/197 (28%), Positives = 73/197 (36%), Gaps = 6/197 (3%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAA--TPPSTS*SCS 517
            TPS   T  P  PT+ T    P  +    T     P      SP      TPP TS +  
Sbjct: 1577 TPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP-TSTTTL 1635

Query: 518  RPLTAAAQSPA----PPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSAST 685
             P T  +  P     PP  T PSP +T      +T +           PPP TT SS  T
Sbjct: 1636 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTT---------TTPPPTTTPSSPIT 1686

Query: 686  CATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAACRLS 865
              TP+ P           +T  TT   TTT ++       P++ +       P++    S
Sbjct: 1687 -TTPSPP-----------TTTMTTPSPTTTPSS-------PITTT-----TTPSSTTTPS 1722

Query: 866  PPCLAAPSPPPCPRPSP 916
            PP     +P P   PSP
Sbjct: 1723 PPPTTMTTPSPTTTPSP 1739

 Score = 41.6 bits (96), Expect = 0.019
 Identities = 50/191 (26%), Positives = 61/191 (31%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAATPPSTS*SCSRP 523
            TPS   T P   PT  T L          T     P     + P    T P  + + S P
Sbjct: 1398 TPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPP 1457

Query: 524  LTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAG 703
            ++       PP  T PSP +T  S    T S            PP TT ++     TP+ 
Sbjct: 1458 ISTTT---TPPPTTTPSPPTTTPSPPTTTPS------------PPTTTTTTPPPTTTPSP 1502

Query: 704  PWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAACRLSPPCLAA 883
            P           +TP T    TTT                 P    P      SPP    
Sbjct: 1503 PM----------TTPITPPASTTT----------------LPPTTTP------SPPTTTT 1530

Query: 884  PSPPPCPRPSP 916
             +PPP   PSP
Sbjct: 1531 TTPPPTTTPSP 1541

 Score = 40.8 bits (94), Expect = 0.032
 Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 3/145 (2%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAATPPSTS*SCSRP 523
            TPS   T  P  P   T    P  +  S      +P    M +P    TP S   + + P
Sbjct: 1656 TPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTP 1715

Query: 524  LTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAG 703
             +    SP P   T PSP +T  S    T++            PP TT S  +T   P  
Sbjct: 1716 SSTTTPSPPPTTMTTPSPTTT-PSPPTTTMT----------TLPPTTTSSPLTTTPLPPS 1764

Query: 704  --PWPCSRLTRRCWSTPCTTR-RWT 769
              P   S  +    +TPC     WT
Sbjct: 1765 ITPPTFSPFSTTTPTTPCVPLCNWT 1789

 Score = 39.3 bits (90), Expect = 0.094
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 5/141 (3%)
 Frame = +2

Query: 509  SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAP-----PPWTTRS 673
            +C  P+     +P+PP  T   P +T  ++   T    P   +  P P     PP TT +
Sbjct: 1387 NCCWPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTT 1446

Query: 674  SASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAA 853
            +     TP+ P           ST  T    TT S         P + + +P    P   
Sbjct: 1447 TPLPTTTPSPP----------ISTTTTPPPTTTPS---------PPTTTPSPPTTTP--- 1484

Query: 854  CRLSPPCLAAPSPPPCPRPSP 916
               SPP     +PPP   PSP
Sbjct: 1485 ---SPPTTTTTTPPPTTTPSP 1502

 Score = 38.1 bits (87), Expect = 0.21
 Identities = 49/200 (24%), Positives = 68/200 (33%), Gaps = 3/200 (1%)
 Frame = +2

Query: 314  PSSRLRTAFKTPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAATP 493
            P S   T   TP+   T  P +  + T  +       + T      L     +     TP
Sbjct: 1926 PISTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTVLITTTTTMTPTPTP 1985

Query: 494  PSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRS 673
             ST  +   P+T      A P PT     +        T++  P   +G   PP  T+ +
Sbjct: 1986 TSTKSTTVTPITTTTTVTATPTPTGTQTPTMIPISTTTTVTPTPTPTTGSTGPPTHTSTA 2045

Query: 674  SASTCATPAGPWPCSR-LTRRCWSTPCT--TRRWTTTSAALWA*WM*PMSHSRAP*PRAP 844
              +   T   P   S   T R  S+P T  T   +T   A+      P S   A  P   
Sbjct: 2046 PIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPSTPTA--PTTT 2103

Query: 845  AAACRLSPPCLAAPSPPPCP 904
            +    LSPP     SPP  P
Sbjct: 2104 SGGHTLSPPPSTTTSPPGTP 2123

>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 61/178 (34%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
 Frame = +2

Query: 401 SRPARSVFSCTWRQLAP---LAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPT-R 568
           S PA +  S T    AP        A+P  AA+PP+T+ S S P T AA +P PP P   
Sbjct: 42  SSPAPAASSATPAARAPSQRTPPTPATPAKAASPPATN-SSSSPRTPAAPAPRPPQPPPA 100

Query: 569 PSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTP 748
            SPA T  S         P      PAP P TT SS      P  P P         S+P
Sbjct: 101 TSPAPTKPSSPPAPKPPSP------PAPSPSTTPSS------PPAPKP---------SSP 139

Query: 749 CTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAA-CRLSPPCLAAPSPPPCPRPSPS 919
                 TT  +        P S   AP P  P        PP  AAP P P P P+P+
Sbjct: 140 PPAATPTTKPSP-------PPSSPPAPRPSPPLPPRTPPPPPPAAAPKPSPSPPPAPT 190

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 39/158 (24%), Positives = 62/158 (38%)
 Frame = +2

Query: 443 LAPLAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR* 622
           +A  A + +S +  ++ P+ + S + P   A     PP P  P+ A++  +  + +  R 
Sbjct: 27  VAVAAGSGSSSQPPSSSPAPAASSATPAARAPSQRTPPTPATPAKAASPPATNSSSSPRT 86

Query: 623 PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM 802
           P   +  P  PP  T  + +  ++P  P P S       +TP                  
Sbjct: 87  PAAPAPRPPQPPPATSPAPTKPSSPPAPKPPSPPAPSPSTTP------------------ 128

Query: 803 *PMSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSP 916
              S   AP P +P  A   +      PS PP PRPSP
Sbjct: 129 ---SSPPAPKPSSPPPAATPTTKPSPPPSSPPAPRPSP 163

 Score = 35.8 bits (81), Expect = 1.0
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
 Frame = +2

Query: 314 PSSRLRTAFKTPSSLLTMPPWSPTLRTRLSR----------PARSVFSCTWRQLAPLAAA 463
           P++   ++ +TP++    PP  P   +              P+    S +    +P A  
Sbjct: 76  PATNSSSSPRTPAAPAPRPPQPPPATSPAPTKPSSPPAPKPPSPPAPSPSTTPSSPPAPK 135

Query: 464 MASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTR----PSPASTGRSMRALTLSR*PR* 631
            +SP  AATP  T+     P +  A  P+PPLP R    P PA+  +             
Sbjct: 136 PSSPPPAATP--TTKPSPPPSSPPAPRPSPPLPPRTPPPPPPAAAPKPSP---------- 183

Query: 632 WSGCPAPPPWTTRSSASTCATP 697
            S  PAP   TT SS+ + +TP
Sbjct: 184 -SPPPAPTNSTTNSSSPSTSTP 204

>gb|AAA59163.1| mucin
          Length = 1270

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 60/226 (26%), Positives = 85/226 (37%), Gaps = 5/226 (2%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWS----PTLRTRLSRPARSV 421
            SPP   ++ P     P    PS  + T    P+S  T+PP +    PT  T    P  + 
Sbjct: 860  SPPTTTTTTP-----PPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTP 914

Query: 422  FSCTWRQLAP-LAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSM 598
               T   + P  +     P    +PP T+ +   P T    +P+PP  T PSP +   + 
Sbjct: 915  SPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT----TPSPPTTTTPSPPTITTTT 970

Query: 599  RALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTS 778
               T +         P+PP  TT +   T  TP+ P           +TP T    TTT 
Sbjct: 971  PPPTTT---------PSPPTTTTTTPPPT-TTPSPPT----------TTPITPPTSTTTL 1010

Query: 779  AALWA*WM*PMSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSP 916
                     P + + +P P         +PP    PSPP    PSP
Sbjct: 1011 ---------PPTTTPSPPPTTTT-----TPPPTTTPSPPTTTTPSP 1042

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 61/221 (27%), Positives = 87/221 (38%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWSPTLRTRLSRPARSVFSCT 433
            SPP   ++ P     P    PS  + T   T + L T  P SP + T  + P  +  S  
Sbjct: 798  SPPTTTTTTP-----PPTTTPSPPITT---TTTPLPTTTP-SPPISTTTTPPPTTTPS-- 846

Query: 434  WRQLAPLAAAMASPRAAATPPSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTL 613
                 P     + P    +PP+T+ +   P T    +P+PP+ T  +P ++  ++   T 
Sbjct: 847  -----PPTTTPSPPTTTPSPPTTTTTTPPPTT----TPSPPMTTPITPPASTTTLPPTTT 897

Query: 614  SR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA 793
               P   +    PPP TT S  +T  TP  P P S  T    +TP      TTT      
Sbjct: 898  PSPPT--TTTTTPPPTTTPSPPTT--TPITP-PTSTTTLPPTTTPSPPPTTTTTPP---- 948

Query: 794  *WM*PMSHSRAP*PRAPAAACRLSPPCLAAPSPPPCPRPSP 916
                P +    P    P      SPP +   +PPP   PSP
Sbjct: 949  ----PTTTPSPPTTTTP------SPPTITTTTPPPTTTPSP 979

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 60/235 (25%), Positives = 88/235 (36%), Gaps = 13/235 (5%)
 Frame = +2

Query: 254  SPPWLWSSWPWHQRRPT*QGPSSRLRTAFKTPSSLLTMPPWS----PTLRTRLSRPARSV 421
            SPP   ++ P     P    PS    T    P+S  T+PP +    P   T    P  + 
Sbjct: 899  SPPTTTTTTP-----PPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 953

Query: 422  FSCTWRQLAPLAAAMASPRAAATP--PSTS*SCSRPLTAAAQSPAPPLPTRPSPASTGRS 595
               T    +P      +P    TP  P+T+ +   P T    +P+PP  T  +P ++  +
Sbjct: 954  SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTT----TPSPPTTTPITPPTSTTT 1009

Query: 596  MRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAGPWPCSRLTRRCWSTPCTTRRW--- 766
            +   T           P+PPP TT +   T  TP+ P      T    S P TT      
Sbjct: 1010 LPPTTT----------PSPPPTTTTTPPPT-TTPSPP------TTTTPSPPITTTTTPPP 1052

Query: 767  -TTTSAALWA*WM*PMSHSRAP*PRAPAAA---CRLSPPCLAAPSPPPCPRPSPS 919
             TT S+ +      P +    P P    ++      +P     PSPPP    +PS
Sbjct: 1053 TTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPS 1107

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 56/197 (28%), Positives = 73/197 (36%), Gaps = 6/197 (3%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAA--TPPSTS*SCS 517
            TPS   T  P  PT+ T    P  +    T     P      SP      TPP TS +  
Sbjct: 952  TPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP-TSTTTL 1010

Query: 518  RPLTAAAQSPA----PPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSAST 685
             P T  +  P     PP  T PSP +T      +T +           PPP TT SS  T
Sbjct: 1011 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTT---------TTPPPTTTPSSPIT 1061

Query: 686  CATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAACRLS 865
              TP+ P           +T  TT   TTT ++       P++ +       P++    S
Sbjct: 1062 -TTPSPP-----------TTTMTTPSPTTTPSS-------PITTT-----TTPSSTTTPS 1097

Query: 866  PPCLAAPSPPPCPRPSP 916
            PP     +P P   PSP
Sbjct: 1098 PPPTTMTTPSPTTTPSP 1114

 Score = 41.6 bits (96), Expect = 0.019
 Identities = 50/191 (26%), Positives = 61/191 (31%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAATPPSTS*SCSRP 523
            TPS   T P   PT  T L          T     P     + P    T P  + + S P
Sbjct: 773  TPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPP 832

Query: 524  LTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAG 703
            ++       PP  T PSP +T  S    T S            PP TT ++     TP+ 
Sbjct: 833  ISTTT---TPPPTTTPSPPTTTPSPPTTTPS------------PPTTTTTTPPPTTTPSP 877

Query: 704  PWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAACRLSPPCLAA 883
            P           +TP T    TTT                 P    P      SPP    
Sbjct: 878  PM----------TTPITPPASTTT----------------LPPTTTP------SPPTTTT 905

Query: 884  PSPPPCPRPSP 916
             +PPP   PSP
Sbjct: 906  TTPPPTTTPSP 916

 Score = 40.8 bits (94), Expect = 0.032
 Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 3/145 (2%)
 Frame = +2

Query: 344  TPSSLLTMPPWSPTLRTRLSRPARSVFSCTWRQLAPLAAAMASPRAAATPPSTS*SCSRP 523
            TPS   T  P  P   T    P  +  S      +P    M +P    TP S   + + P
Sbjct: 1031 TPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTP 1090

Query: 524  LTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAPPPWTTRSSASTCATPAG 703
             +    SP P   T PSP +T  S    T++            PP TT S  +T   P  
Sbjct: 1091 SSTTTPSPPPTTMTTPSPTTT-PSPPTTTMT----------TLPPTTTSSPLTTTPLPPS 1139

Query: 704  --PWPCSRLTRRCWSTPCTTR-RWT 769
              P   S  +    +TPC     WT
Sbjct: 1140 ITPPTFSPFSTTTPTTPCVPLCNWT 1164

 Score = 39.3 bits (90), Expect = 0.094
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 5/141 (3%)
 Frame = +2

Query: 509  SCSRPLTAAAQSPAPPLPTRPSPASTGRSMRALTLSR*PR*WSGCPAP-----PPWTTRS 673
            +C  P+     +P+PP  T   P +T  ++   T    P   +  P P     PP TT +
Sbjct: 762  NCCWPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTT 821

Query: 674  SASTCATPAGPWPCSRLTRRCWSTPCTTRRWTTTSAALWA*WM*PMSHSRAP*PRAPAAA 853
            +     TP+ P           ST  T    TT S         P + + +P    P   
Sbjct: 822  TPLPTTTPSPP----------ISTTTTPPPTTTPS---------PPTTTPSPPTTTP--- 859

Query: 854  CRLSPPCLAAPSPPPCPRPSP 916
               SPP     +PPP   PSP
Sbjct: 860  ---SPPTTTTTTPPPTTTPSP 877



EST assemble image


clone accession position
1 MX253g03_r BP092406 1 525
2 MX240a08_r BP091501 4 464
3 LC055h10_r AV622878 122 681
4 MXL009c01_r BP093496 395 899
5 LC044b07_r AV622107 526 910
6 LC011a06_r AV619632 557 921




Chlamydomonas reinhardtii
Kazusa DNA Research Institute