KCC002796A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002796A_C01 KCC002796A_c01
gcacacttctgtagtcgtgttgatgctgtGGGGCTGTTACTTGTTTATTTCCGCTCTGAG
TGTGCGTGGTGACCCCGACCTTTGAGGGCCTCGGTGGCCAAGCACACAGAATGATACTCT
TTATTTCTCTCCTGTTACTTGCCACGAATGCTCCTGCCATGGCTGGAAACCATGCCCAGT
TTATCCAGTCGGGGTACATTGCCAGCACACCGGGCTTGCACCTGCGCACTGCTGCCACAA
TCTGCGACTCCAGCATTTTCAAGTGCCGGCTTTGTCCACAGGACCAAACGGTTCTGCTCA
CGTCGCCAAAGAACCAGCAACTCTACACAGCACTGAATGATGACGCTTTCGCGAACACCT
ACTTCGCCCACACTGTTGGCTTAAGTGTTGTCTCACGCCCACGGCTCATTTCAACCTTCT
ATCTGCTGCGTGAGGCAATCCTTGCCGTGCCGGGCGACGTCGTCGAGACAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002796A_C01 KCC002796A_c01
         (472 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_048047.1| orf 75 [Ateline herpesvirus 3] gi|11278253|pir|...    40  0.014
ref|XP_211321.1| hypothetical protein XP_211321 [Homo sapiens]         34  0.98
ref|NP_040277.1| ORF 75~EILF1~sim. to ORF 03 and EBV BNRF1 [Saim...    33  1.7
ref|NP_840982.1| probable hydrolase oxidoreductase protein [Nitr...    33  2.2
gb|EAA41029.1| GLP_12_49813_66465 [Giardia lamblia ATCC 50803]         33  2.2

>ref|NP_048047.1| orf 75 [Ateline herpesvirus 3] gi|11278253|pir||T42989 hypothetical
           protein 75 - ateline herpesvirus 3 (strain 73)
           gi|4019302|gb|AAC95600.1| orf 75 [Ateline herpesvirus 3]
          Length = 1299

 Score = 40.0 bits (92), Expect = 0.014
 Identities = 38/121 (31%), Positives = 57/121 (46%), Gaps = 19/121 (15%)
 Frame = +3

Query: 135 LLATNAPAMAGNHAQFIQ---SGYIASTPGLHLRTA-----ATICDSSIFKCRLCPQDQT 290
           LLA  A A   N  + +    +G IA  PG+    +     + ICD+S+F  RL   D T
Sbjct: 609 LLAHPAVASKSNIVRRLDRCGNGLIAQQPGVGPHDSPVADYSIICDTSVFTARL-ENDGT 667

Query: 291 VL--LTSPKNQQLYTALN-----DDAFANTYFAHTVGLS----VVSRPRLISTFYLLREA 437
           ++  +  P+ QQ+YT ++      D F  T  A  + L      +SR  +I T Y + EA
Sbjct: 668 IIRKINKPEAQQMYTQIHKWFSTGDLFLQTPAAKVIALGEQAYKISRNPIIGTKYAIAEA 727

Query: 438 I 440
           I
Sbjct: 728 I 728

>ref|XP_211321.1| hypothetical protein XP_211321 [Homo sapiens]
          Length = 111

 Score = 33.9 bits (76), Expect = 0.98
 Identities = 21/52 (40%), Positives = 24/52 (45%)
 Frame = +1

Query: 130 SCYLPRMLLPWLETMPSLSSRGTLPAHRACTCALLPQSATPAFSSAGFVHRT 285
           SC LP+    W   +PSL S    P  +     L PQ ATPA      VHRT
Sbjct: 30  SCLLPQTESSWRNCLPSLPSLVPCPFSQLPRAELCPQRATPA------VHRT 75

>ref|NP_040277.1| ORF 75~EILF1~sim. to ORF 03 and EBV BNRF1 [Saimiriine herpesvirus
           2] gi|139166|sp|P11282|VP75_HSVSA PROBABLE MEMBRANE
           ANTIGEN 75 (TEGUMENT PROTEIN) gi|73909|pir||WMBEHS
           membrane antigen p140 - saimiriine herpesvirus 1 (strain
           11) gi|60396|emb|CAA45698.1| unnamed protein product
           [Saimiriine herpesvirus 2] gi|331004|gb|AAA46151.1|
           tegument protein gi|808693|gb|AAA66573.1| tegument
           protein
          Length = 1299

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
 Frame = +3

Query: 189 SGYIASTPGLHLRTA-----ATICDSSIFKCRLCPQDQTV-LLTSPKNQQLYTALN---- 338
           +G IA  PG+    A     A ICDSS+F  RL    Q++  ++  + Q+ Y  ++    
Sbjct: 631 NGLIAQQPGIGPSDAPVSDYAIICDSSMFPARLENDAQSIKKISKQEAQRAYAQIHKWFG 690

Query: 339 -DDAFANTYFAHTVGLS----VVSRPRLISTFYLLREAI 440
            +  F NT  A  + L      +SR  ++   Y + EAI
Sbjct: 691 TEKLFLNTISAKVIALGEQAYKLSRNPIVGVKYAIAEAI 729

>ref|NP_840982.1| probable hydrolase oxidoreductase protein [Nitrosomonas europaea
           ATCC 19718] gi|30138529|emb|CAD84819.1| probable
           hydrolase oxidoreductase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 292

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
 Frame = -1

Query: 130 REIKSIILCAWPPRPSKVGVTTHTQSGNKQVT-APQHQHDYRSV 2
           RE+  IIL  +P  P +VG+  H+  G+  +T A +H   YRSV
Sbjct: 135 RELYDIILDRFPVDPERVGIFGHSMGGHGALTLALRHPGHYRSV 178

>gb|EAA41029.1| GLP_12_49813_66465 [Giardia lamblia ATCC 50803]
          Length = 5550

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = -1

Query: 310  FGDVSRTVWSC-GQSRHLKMLESQIVAAVRRCKPGVLAMYPDWINWAWFPAMAGAFVASN 134
            + ++     +C  Q+R L+ L+  +++ +RR     ++M   W+      A+  A+ A  
Sbjct: 1525 YNEIDEEFRNCVAQARDLESLKI-VLSTLRRVANRTMSMELTWLELESLFALLQAYNAEV 1583

Query: 133  RREIKSIILCAWPPRPSKVGVTTHTQSGNKQVTAPQ 26
            R +    +L   P R S+VG  T   + + Q+TA Q
Sbjct: 1584 RIKFDKSLLSGSPNRGSRVGSPTRGSNTSPQLTAEQ 1619



EST assemble image


clone accession position
1 LC010h09_r AV619624 1 472
2 MX216h11_r BP089980 30 441




Chlamydomonas reinhardtii
Kazusa DNA Research Institute