KCC002793A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002793A_C01 KCC002793A_c01
gtcatcaccttaccataacaccgtgtgacaacctgcggttgcacgtcatcgagccggcga
aacggtttaccagtaatccgCCGGGTTTTCCATAGCCTCTACTCGCAACCCCAAAGCAAA
ATCCAACAGAAGTTGTAGAGCATATAACGCAAATGTCCGCAGCAGCATCCACTGCCGCTG
AGCATGCGCTGCGGCGATTCGGGCTGGTTGGTCGGACGTGCCTGGTCACCGGTGCCACCC
GGGGCATCGGCAAAGCCATTGTGGAAGAGTTGGGCAAGCTTGGAGCCAAGATCTTCGTGT
GCGCGCGCAGCGCCGACGACTTGGCGACACAGCTGGAGGGGTGGCGCGCGGCAGGACTGG
ATGTGCAGGGCATCGTGTGTGACGTGTCGGACCGAGCCCAGCGCGGCGAGCTCGCGGCCA
AGGTGTCCGAGGCCTTTGGCGGCAAGCTCAACATACTGGTGAACAACGTGGGCACCAACA
TTCGCAAACCCACGGTGGAGTACTCGGAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002793A_C01 KCC002793A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_196225.1| short-chain dehydrogenase/reductase family prot...   131  6e-30
gb|AAP06917.1| unknown protein [Oryza sativa (japonica cultivar-...   129  3e-29
gb|AAM61117.1| short chain alcohol dehydrogenase-like [Arabidops...   127  6e-29
dbj|BAC65128.1| short chain alcohol dehydrogenase-like protein [...   122  3e-27
gb|AAP06906.1| putative pfam00106, adh_short, short chain dehydr...   121  6e-27

>ref|NP_196225.1| short-chain dehydrogenase/reductase family protein (tropinone
           reductase, putative) [Arabidopsis thaliana]
           gi|8978342|dbj|BAA98195.1| short chain alcohol
           dehydrogenase-like [Arabidopsis thaliana]
           gi|27754526|gb|AAO22710.1| putative short chain alcohol
           dehydrogenase [Arabidopsis thaliana]
           gi|28394081|gb|AAO42448.1| putative short chain alcohol
           dehydrogenase [Arabidopsis thaliana]
          Length = 264

 Score =  131 bits (329), Expect = 6e-30
 Identities = 63/105 (60%), Positives = 78/105 (74%)
 Frame = +3

Query: 192 RRFGLVGRTCLVTGATRGIGKAIVEELGKLGAKIFVCARSADDLATQLEGWRAAGLDVQG 371
           +R+ L G+T LVTG TRGIG+A+VEEL K GAK+  C+R+ ++L   L  W+A GL V G
Sbjct: 5   KRWSLAGKTALVTGGTRGIGRAVVEELAKFGAKVHTCSRNQEELNACLNDWKANGLVVSG 64

Query: 372 IVCDVSDRAQRGELAAKVSEAFGGKLNILVNNVGTNIRKPTVEYS 506
            VCD S R QR +L  + S AF GKLNIL+NNVGTN+RKPTVEYS
Sbjct: 65  SVCDASVRDQREKLIQEASSAFSGKLNILINNVGTNVRKPTVEYS 109

>gb|AAP06917.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 311

 Score =  129 bits (323), Expect = 3e-29
 Identities = 67/119 (56%), Positives = 87/119 (72%), Gaps = 1/119 (0%)
 Frame = +3

Query: 153 MSAAASTAAE-HALRRFGLVGRTCLVTGATRGIGKAIVEELGKLGAKIFVCARSADDLAT 329
           M+AAA T+A+  A RR+ L G+T LVTG TRGIG+A+VEEL  LGA +  C+R  ++L+ 
Sbjct: 1   MAAAAETSAKVGAPRRWSLQGKTALVTGGTRGIGRAVVEELAALGATVHTCSRKEEELSE 60

Query: 330 QLEGWRAAGLDVQGIVCDVSDRAQRGELAAKVSEAFGGKLNILVNNVGTNIRKPTVEYS 506
           +L+ W A G  V   VCD+S R QR  L  +V++ FGGKL+ILVNNVGTNIRKPT E+S
Sbjct: 61  RLKEWEARGFRVTTSVCDLSVRDQRERLLRQVADLFGGKLDILVNNVGTNIRKPTTEFS 119

>gb|AAM61117.1| short chain alcohol dehydrogenase-like [Arabidopsis thaliana]
          Length = 264

 Score =  127 bits (320), Expect = 6e-29
 Identities = 62/105 (59%), Positives = 77/105 (73%)
 Frame = +3

Query: 192 RRFGLVGRTCLVTGATRGIGKAIVEELGKLGAKIFVCARSADDLATQLEGWRAAGLDVQG 371
           +R+ L G+T LVTG TRGIG+A+VEEL K  AK+  C+R+ ++L   L  W+A GL V G
Sbjct: 5   KRWSLAGKTALVTGGTRGIGRAVVEELAKFCAKVHTCSRNQEELNACLNDWKANGLVVSG 64

Query: 372 IVCDVSDRAQRGELAAKVSEAFGGKLNILVNNVGTNIRKPTVEYS 506
            VCD S R QR +L  + S AF GKLNIL+NNVGTN+RKPTVEYS
Sbjct: 65  SVCDASVRDQREKLIQEASSAFSGKLNILINNVGTNVRKPTVEYS 109

>dbj|BAC65128.1| short chain alcohol dehydrogenase-like protein [Daucus carota]
          Length = 277

 Score =  122 bits (306), Expect = 3e-27
 Identities = 59/104 (56%), Positives = 75/104 (71%)
 Frame = +3

Query: 195 RFGLVGRTCLVTGATRGIGKAIVEELGKLGAKIFVCARSADDLATQLEGWRAAGLDVQGI 374
           R+ L G T LVTG TRGIG AIVEEL +LGA ++ C+R+  +L  +LE WRA G DV G 
Sbjct: 20  RWSLAGMTALVTGGTRGIGHAIVEELAELGACVYTCSRNEQELNERLEEWRAKGFDVTGS 79

Query: 375 VCDVSDRAQRGELAAKVSEAFGGKLNILVNNVGTNIRKPTVEYS 506
           VCDVS   +R +L  ++S  FGGKL+IL+NNVGTNIR+ T  Y+
Sbjct: 80  VCDVSSVTEREQLFQRISSCFGGKLHILINNVGTNIRRATENYT 123

>gb|AAP06906.1| putative pfam00106, adh_short, short chain dehydrogenase [Oryza
           sativa (japonica cultivar-group)]
           gi|29893662|gb|AAP06916.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 293

 Score =  121 bits (303), Expect = 6e-27
 Identities = 63/118 (53%), Positives = 80/118 (67%)
 Frame = +3

Query: 153 MSAAASTAAEHALRRFGLVGRTCLVTGATRGIGKAIVEELGKLGAKIFVCARSADDLATQ 332
           M+AA ++    A  R+ L G+  LVTG TRGIG+A+VEEL  LGA +  C+R+  +L  +
Sbjct: 1   MAAAETSGTVAAPGRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGER 60

Query: 333 LEGWRAAGLDVQGIVCDVSDRAQRGELAAKVSEAFGGKLNILVNNVGTNIRKPTVEYS 506
           L+ W A G  V   VCD+S R QR  L   V++ FGGKL+ILVNNVGTNIRKPT EYS
Sbjct: 61  LKEWEARGFRVTISVCDLSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTTEYS 118



EST assemble image


clone accession position
1 LC010b11_r AV619570 1 510
2 MXL062f04_r BP096662 104 495




Chlamydomonas reinhardtii
Kazusa DNA Research Institute