KCC002792A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002792A_C01 KCC002792A_c01
CTACTCGCTTGTTCAGTGATACACATAATCCCACCAAGCCACAAACACTGTTGCCACCGA
TTCACTGACCGATTCACGAGGCGGGAAGAAGGGCTTTATAGCTCTACTGCACGGATAGGT
CAAATTATGCACGAGTCACCTCTGTAGTTCTCAAGCAGCTTATCGCGTCGTGGAACTTCA
GAAATGCTCTACGGGCAAGCCGTTTGGGACCCGATCCTTATCATAGCGCAGATAGTCACG
CTGCAATGCCTCTTCTACCTGACGTTGGGCCTCTTCCAGGGCCTCTTCATAGGGCCATAC
GTAAGCCGGCTGTCGATCGCCTACCTGTTCAGCTGGCGCATGTATAGCATCGGTACATAC
TCCGGCGTCATCAGCGTGCTATCGCTCCTGCTGACTGCCTGCTTGAGCGCCGTATTCCTA
GTCTGGATCGTGGAGAGGGCAAAAAAGTGCTTGGACTTTGCCTCCACCTGTTTCATCTTC
CACCTTTGGTTCTGTTGGCAATACGACGGCTTTCCTGCACGCTTTGAGTGGTGGGTGGCC
AACATCCTGGGGCTCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002792A_C01 KCC002792A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG52261.1|AC011717_29 unknown protein; 19658-19089 [Arabidop...   135  4e-31
ref|NP_565225.1| expressed protein [Arabidopsis thaliana] gi|306...   135  4e-31
gb|AAH49317.1| Similar to chromosome 20 open reading frame 169 [...    92  6e-18
emb|CAC39448.1| hypothetical protein [Homo sapiens]                    90  2e-17
ref|NP_291020.1| uncharacterized hypothalamus protein HSMNP1 [Ho...    89  3e-17

>gb|AAG52261.1|AC011717_29 unknown protein; 19658-19089 [Arabidopsis thaliana]
          Length = 157

 Score =  135 bits (340), Expect = 4e-31
 Identities = 60/124 (48%), Positives = 85/124 (68%)
 Frame = +1

Query: 184 MLYGQAVWDPILIIAQIVTLQCLFYLTLGLFQGLFIGPYVSRLSIAYLFSWRMYSIGTYS 363
           M YG AVWDP LI+ QI+ LQC +YLTLGLF  +F+G  V RLS+ Y F +   +  T++
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 364 GVISVLSLLLTACLSAVFLVWIVERAKKCLDFASTCFIFHLWFCWQYDGFPARFEWWVAN 543
           G   + S L ++   AV+++++VERA+KCLDF++T +I HL+FC  Y G+P+   WWV N
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 544 ILGL 555
             GL
Sbjct: 121 GTGL 124

>ref|NP_565225.1| expressed protein [Arabidopsis thaliana]
           gi|30699474|ref|NP_849909.1| expressed protein
           [Arabidopsis thaliana] gi|25373347|pir||B96831
           hypothetical protein F18B13.6 [imported] - Arabidopsis
           thaliana gi|5902377|gb|AAD55479.1|AC009322_19 Unknown
           protein [Arabidopsis thaliana]
           gi|13877733|gb|AAK43944.1|AF370129_1 unknown protein
           [Arabidopsis thaliana] gi|21594734|gb|AAM66038.1|
           unknown [Arabidopsis thaliana]
           gi|25054959|gb|AAN71954.1| unknown protein [Arabidopsis
           thaliana]
          Length = 152

 Score =  135 bits (340), Expect = 4e-31
 Identities = 60/124 (48%), Positives = 85/124 (68%)
 Frame = +1

Query: 184 MLYGQAVWDPILIIAQIVTLQCLFYLTLGLFQGLFIGPYVSRLSIAYLFSWRMYSIGTYS 363
           M YG AVWDP LI+ QI+ LQC +YLTLGLF  +F+G  V RLS+ Y F +   +  T++
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 364 GVISVLSLLLTACLSAVFLVWIVERAKKCLDFASTCFIFHLWFCWQYDGFPARFEWWVAN 543
           G   + S L ++   AV+++++VERA+KCLDF++T +I HL+FC  Y G+P+   WWV N
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 544 ILGL 555
             GL
Sbjct: 121 GTGL 124

>gb|AAH49317.1| Similar to chromosome 20 open reading frame 169 [Danio rerio]
          Length = 137

 Score = 91.7 bits (226), Expect = 6e-18
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = +1

Query: 202 VWDPILIIAQIVTLQCLFYLTLGLFQGLFIGPYVSRLSIAYLFSWRMYSIGTYSGVISVL 381
           VWDP+LII+QIV +QC++Y  LGL+     G   +  S+  +FS+ +    T  G +S++
Sbjct: 9   VWDPVLIISQIVLMQCIYYSFLGLWLAGVDGLVQTSRSLDQIFSYEVLGFSTTHGRLSMM 68

Query: 382 SLLLTACLSAVFLVWIVERAKKCLDFASTCFIFHLWFCWQYDG-FPARFEWWVANI 546
           + +L +   A  L + + R K+CLDF  T   FH+  CW Y+   PA   WW+ N+
Sbjct: 69  AFILNSLTCAFGLWFFIRRGKQCLDFTVTVHFFHMIGCWIYNAHLPAALSWWLVNV 124

>emb|CAC39448.1| hypothetical protein [Homo sapiens]
          Length = 194

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 49/130 (37%), Positives = 73/130 (55%), Gaps = 1/130 (0%)
 Frame = +1

Query: 151 SSSLSRRGTSEMLYGQAVWDPILIIAQIVTLQCLFYLTLGLFQGLFIGPYVSRLSIAYLF 330
           SSSLS     +  +   VWDP+LI++QIV +Q ++Y +LGL+  L  G   S  S+  +F
Sbjct: 32  SSSLSLGMAGQ--FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMF 89

Query: 331 SWRMYSIGTYSGVISVLSLLLTACLSAVFLVWIVERAKKCLDFASTCFIFHLWFCWQYDG 510
              +    T  G +S++S +L A   A+ L++ + R K+CLDF  T   FHL  CW Y  
Sbjct: 90  DAEILGFSTPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSS 149

Query: 511 -FPARFEWWV 537
            FP+   WW+
Sbjct: 150 RFPSALTWWL 159

>ref|NP_291020.1| uncharacterized hypothalamus protein HSMNP1 [Homo sapiens]
           gi|22761238|dbj|BAC11506.1| unnamed protein product
           [Homo sapiens] gi|29386975|gb|AAH48286.1| C20orf169
           protein [Homo sapiens]
          Length = 156

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 44/113 (38%), Positives = 66/113 (57%), Gaps = 1/113 (0%)
 Frame = +1

Query: 202 VWDPILIIAQIVTLQCLFYLTLGLFQGLFIGPYVSRLSIAYLFSWRMYSIGTYSGVISVL 381
           VWDP+LI++QIV +Q ++Y +LGL+  L  G   S  S+  +F   +    T  G +S++
Sbjct: 9   VWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSMM 68

Query: 382 SLLLTACLSAVFLVWIVERAKKCLDFASTCFIFHLWFCWQYDG-FPARFEWWV 537
           S +L A   A+ L++ + R K+CLDF  T   FHL  CW Y   FP+   WW+
Sbjct: 69  SFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWL 121



EST assemble image


clone accession position
1 MX225g01_r BP090564 1 563
2 LC009h01_r AV619548 106 635
3 LC018g12_r AV620193 118 615
4 LC031e03_r AV621119 129 662
5 MX059c01_r BP088390 133 471
6 LC100a06_r AV625935 144 633




Chlamydomonas reinhardtii
Kazusa DNA Research Institute