KCC002790A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002790A_C01 KCC002790A_c01
TCCTGTGTTATATATCATCGCCGCACTGATTGAACGCCCTTTCTCCACTCCTGGACCACA
GACTCTTCGGCATCCCGCCTGGTCCTCACCAGATCACGCCCGTTTGAAGCTGTAACTAGC
CTCAACAGCCTACATACAAGTACAGCAAATATGGCGGACAAAGAAGAGGAGCGCGTGCTT
CAGGAGTTTAGCGAAATGCAGGAGAAAGTCCTCGTCCAGTCGGAGTTCATGAATCGGACA
ATGCAGCAGGAGCGCATGGTCGGGGTGCACAGGCAGCGCGCCGTCCTGACCAAGACGGAG
CTCTCGGGGATGCCCGACTCCGCCACCATGTACAAGAGCATTGGCAAGGCGTACTTTGCA
AGCCCTAAGGCCGACATCCTGAAGAACCTGGACGACACGGTATCGCAGCTTGAGAGCGAC
AGCAAGAAGCTGAAGGACCAGCGCGAGGCTATCGAGCAGAAGATGAAGGACACGGAGGCG
CAGATCCGCGAGCTGCTTGCGCATTCGCCATCACTGGTGCGGCGGCTAGGCGCCGTCAGC
A


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002790A_C01 KCC002790A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850990.1| expressed protein [Arabidopsis thaliana] gi|150...    59  4e-08
ref|NP_178744.3| expressed protein [Arabidopsis thaliana]              55  5e-07
emb|CAA76759.1| prefoldin subunit 1 [Homo sapiens]                     52  7e-06
gb|AAH24693.1| Prefoldin 1 [Mus musculus]                              51  1e-05
ref|XP_319481.1| ENSANGP00000014221 [Anopheles gambiae] gi|21301...    50  1e-05

>ref|NP_850990.1| expressed protein [Arabidopsis thaliana] gi|15081640|gb|AAK82475.1|
           At2g07350/T13E11.12 [Arabidopsis thaliana]
           gi|20334838|gb|AAM16175.1| At2g07350/T13E11.12
           [Arabidopsis thaliana] gi|21592911|gb|AAM64861.1|
           unknown [Arabidopsis thaliana]
          Length = 128

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 32/125 (25%), Positives = 62/125 (49%)
 Frame = +1

Query: 166 EERVLQEFSEMQEKVLVQSEFMNRTMQQERMVGVHRQRAVLTKTELSGMPDSATMYKSIG 345
           +E     F E+Q  ++  +  + +   Q R     R+RA LT  EL  +P+    YKSIG
Sbjct: 3   DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62

Query: 346 KAYFASPKADILKNLDDTVSQLESDSKKLKDQREAIEQKMKDTEAQIRELLAHSPSLVRR 525
           + +   PK  +    +  +   E+    L+  +E +E+++ + E  +RELL   P + ++
Sbjct: 63  RTFVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQ 122

Query: 526 LGAVS 540
           + ++S
Sbjct: 123 IMSMS 127

>ref|NP_178744.3| expressed protein [Arabidopsis thaliana]
          Length = 127

 Score = 55.5 bits (132), Expect = 5e-07
 Identities = 33/125 (26%), Positives = 62/125 (49%)
 Frame = +1

Query: 166 EERVLQEFSEMQEKVLVQSEFMNRTMQQERMVGVHRQRAVLTKTELSGMPDSATMYKSIG 345
           +E     F E+Q  ++  +  + +   Q R     R+RA LT  EL  +P+    YKSIG
Sbjct: 3   DEATRAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIG 62

Query: 346 KAYFASPKADILKNLDDTVSQLESDSKKLKDQREAIEQKMKDTEAQIRELLAHSPSLVRR 525
           K +   PK  +    +  +   E+    L+  +E +E+++ + E  +RELL   P + ++
Sbjct: 63  K-FVLEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQEPGIAQQ 121

Query: 526 LGAVS 540
           + ++S
Sbjct: 122 IMSMS 126

>emb|CAA76759.1| prefoldin subunit 1 [Homo sapiens]
          Length = 122

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 30/116 (25%), Positives = 58/116 (49%)
 Frame = +1

Query: 151 MADKEEERVLQEFSEMQEKVLVQSEFMNRTMQQERMVGVHRQRAVLTKTELSGMPDSATM 330
           MA   +  + + F+E+Q KV+   + +     Q   +   ++ A LT TE+  + D   M
Sbjct: 1   MAAPVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM 60

Query: 331 YKSIGKAYFASPKADILKNLDDTVSQLESDSKKLKDQREAIEQKMKDTEAQIRELL 498
           Y+ +G+ +    K  I   L +     E   K+L+ ++  +E+++K+ E  IRE+L
Sbjct: 61  YEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERRLKEAEDNIREML 116

>gb|AAH24693.1| Prefoldin 1 [Mus musculus]
          Length = 122

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 31/116 (26%), Positives = 57/116 (48%)
 Frame = +1

Query: 151 MADKEEERVLQEFSEMQEKVLVQSEFMNRTMQQERMVGVHRQRAVLTKTELSGMPDSATM 330
           MA   +  + + F+E+Q KV+   + +     Q   +   ++ A LT TE+  + D   M
Sbjct: 1   MAASVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNM 60

Query: 331 YKSIGKAYFASPKADILKNLDDTVSQLESDSKKLKDQREAIEQKMKDTEAQIRELL 498
           Y+ IG+ +    K  I   L +     E   K+L+ ++  +E+ +K+ E  IRE+L
Sbjct: 61  YEGIGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116

>ref|XP_319481.1| ENSANGP00000014221 [Anopheles gambiae] gi|21301788|gb|EAA13933.1|
            ENSANGP00000014221 [Anopheles gambiae str. PEST]
          Length = 1227

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 34/129 (26%), Positives = 62/129 (47%), Gaps = 3/129 (2%)
 Frame = +1

Query: 148  NMADKEEERVLQEFSEMQEKVLVQSEFMNRTMQQERMVGVHRQRAVLTKTELSGMPDSAT 327
            N AD+ E+  ++    MQ + L   E   +T QQ++ VG  +Q+    + +L     +A 
Sbjct: 1089 NRADQAEKAAIELQKRMQTEAL---EATKKTQQQQQQVGQLQQQIQQMQQQLQQATQAAN 1145

Query: 328  MYKSIGKAYFASPKADI---LKNLDDTVSQLESDSKKLKDQREAIEQKMKDTEAQIRELL 498
               +       + +  +   +K ++D    LES+ K  +DQR+AIE K K+ E + + L+
Sbjct: 1146 QKVAQNAGVSEAERKQLEAQMKQIEDATRLLESERKTFEDQRKAIENKRKELEDKEKNLI 1205

Query: 499  AHSPSLVRR 525
                 L +R
Sbjct: 1206 EFDKQLKKR 1214



EST assemble image


clone accession position
1 LC009a11_r AV619494 1 389
2 MX214e10_r BP089831 1 395
3 MXL016f02_r BP093987 59 543




Chlamydomonas reinhardtii
Kazusa DNA Research Institute