KCC002785A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002785A_C01 KCC002785A_c01
tgctttggggacaagtggtttgctcctggcactattccggCGTGGAAGGACGTCGCTGAG
CAGATGCGGGTCTCCAACATCGCCATGCCACTTTACTCGATGCTGCCGGCCCTAACGGAG
ATGGCGGCGGAGAAGGGCTGGACCCGCGCCTACCCGCGCGTGGAGAACGTTGGCCTGCCG
GCTTACGTGCTCTACTTCTTCCTCTACATGACCTCAGTGGAGTTCGGCGTTTACTGGATG
CACCGCATCCTGCACTGGGGCCCGCTCTACAAGTACCTGCACTGGGACCACCACAAGTAC
AACAAGGAGCACACCCTTTCGCCCTTCGCTGGTCTGGCTTTCCACCCCCTTGATGGCATC
CTCCAGGCCGTCCCGTACGCGTGGACCCTCCTCTACTGCCCCATGCACTTCCTGACCCAC
GAGCTCCTGCTGTTCGCCACCGGCGTGTGGACTACCAACATCCACGACTGCCTGCACGGC
CACGTGTGGCCCATCATGGGGGCCGGCTACCACACCATCCACCACACCACCTACAAGCAC
AACTACGGCCACTACTTCATCTTCATGGACTACCTGATGGGCACACTCACCACGCCCGAG
CAGTACGACGCGGACAAGGCGGCTCGTGCCACGAAGGCCGTCAAGGCGCAGTAACGACAG
CGCAGGCGCAGCTTGTTCGGCCTGCGTCTCTCCTTGATGTAGTGCCCTGAGCGTTGCGGG
TCCGGCCCCGTCCGGCACGTGCGGCAGGTGGCTTCCAACGGAAGCGGGAGGTTTTGGGGC
AGGAATGCAGGGGCTTGCCTAATGGCTTGACCCCGGTGCCCGGAATGCTGGCGGCGTGCA
GTGAATGTGCATGGCGAAGGTGCTGCATAACTCGGGTCAATCTTGGTCATCTGTCCACAA
AGTATGGGAGGAATGCTGAAGCAGGTAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002785A_C01 KCC002785A_c01
         (930 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9ZT29|SC5D_TOBAC Delta-7-sterol-C5(6)-desaturase (Delta-7-C-...   252  7e-66
gb|AAD38120.1|AF105034_1 delta7 sterol C-5 desaturase [Arabidops...   248  8e-65
ref|NP_186907.1| delta 7-sterol-C5-desaturase (STE1) [Arabidopsi...   247  2e-64
pir||S71251 C-5 sterol desaturase (EC 1.-.-.-) - Arabidopsis tha...   245  9e-64
gb|AAM66060.1| sterol-C5-desaturase [Arabidopsis thaliana]            245  9e-64

>sp|Q9ZT29|SC5D_TOBAC Delta-7-sterol-C5(6)-desaturase (Delta-7-C-5 sterol desaturase)
           (Delta7-sterol-C5-desaturase) gi|4140398|gb|AAD04034.1|
           sterol-C5(6)-desaturase [Nicotiana tabacum]
          Length = 271

 Score =  252 bits (643), Expect = 7e-66
 Identities = 116/196 (59%), Positives = 144/196 (73%), Gaps = 1/196 (0%)
 Frame = +1

Query: 34  IPAWKDVAEQMRVSNIAMPLYSMLPALTEMAAEKGWTRAYPRVENVGLPAYVLYFFLYMT 213
           IP+ K +  Q+ V+  AMP Y  LP+L+E   E GWT+ + R+ +VG  +YV+Y  +Y+ 
Sbjct: 75  IPSNKAMLLQISVAMKAMPWYCALPSLSEYMIENGWTKCFARISDVGWLSYVIYAAIYLV 134

Query: 214 SVEFGVYWMHRILH-WGPLYKYLHWDHHKYNKEHTLSPFAGLAFHPLDGILQAVPYAWTL 390
            VEFG+YWMH  LH   PLYKYLH  HH YNK++TLSPFAGLAFHPLDGILQAVP+   L
Sbjct: 135 IVEFGIYWMHMELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPLDGILQAVPHVVAL 194

Query: 391 LYCPMHFLTHELLLFATGVWTTNIHDCLHGHVWPIMGAGYHTIHHTTYKHNYGHYFIFMD 570
           L  PMHF TH  L+F   +WT NIHDC+HG V+P+MGAGYHTIHH TY+HNYGHY I+MD
Sbjct: 195 LLVPMHFSTHIALIFLEALWTANIHDCIHGKVFPVMGAGYHTIHHRTYRHNYGHYTIWMD 254

Query: 571 YLMGTLTTPEQYDADK 618
           ++ GTL  P + DA K
Sbjct: 255 WMFGTLRDPVEEDAKK 270

>gb|AAD38120.1|AF105034_1 delta7 sterol C-5 desaturase [Arabidopsis thaliana]
          Length = 281

 Score =  248 bits (634), Expect = 8e-65
 Identities = 113/203 (55%), Positives = 143/203 (69%), Gaps = 1/203 (0%)
 Frame = +1

Query: 34  IPAWKDVAEQMRVSNIAMPLYSMLPALTEMAAEKGWTRAYPRVENVGLPAYVLYFFLYMT 213
           IP  K +  QM V+  AMP Y++LP ++E   E+GWT+ +  ++  G   Y +Y  +Y+ 
Sbjct: 78  IPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWTKCFASIDEFGWILYFVYIAIYLV 137

Query: 214 SVEFGVYWMHRILH-WGPLYKYLHWDHHKYNKEHTLSPFAGLAFHPLDGILQAVPYAWTL 390
            VEFG+YWMHR LH   PLYKYLH  HH YNK++TLSPFAGLAFHP+DGILQAVP+   L
Sbjct: 138 FVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIAL 197

Query: 391 LYCPMHFLTHELLLFATGVWTTNIHDCLHGHVWPIMGAGYHTIHHTTYKHNYGHYFIFMD 570
              P+HF TH  LLF   +WT NIHDC+HG++WP+MGAGYHTIHHTTYKHNYGHY I+MD
Sbjct: 198 FIVPIHFTTHIGLLFMEAIWTANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWMD 257

Query: 571 YLMGTLTTPEQYDADKAARATKA 639
           ++ G+L  P   + D      KA
Sbjct: 258 WMFGSLRDPLLEEDDNKDSFKKA 280

>ref|NP_186907.1| delta 7-sterol-C5-desaturase (STE1) [Arabidopsis thaliana]
           gi|33301592|sp|Q39208|SC51_ARATH
           Delta-7-sterol-C5(6)-desaturase 1 (Delta-7-C-5 sterol
           desaturase 1) (Delta7-sterol-C5-desaturase 1) (STEROL1
           protein) (Dwarf 7 protein) gi|4234768|gb|AAD12944.1|
           sterol-C5-desaturase [Arabidopsis thaliana]
           gi|6957721|gb|AAF32465.1| sterol-C5-desaturase
           [Arabidopsis thaliana]
          Length = 281

 Score =  247 bits (630), Expect = 2e-64
 Identities = 113/203 (55%), Positives = 142/203 (69%), Gaps = 1/203 (0%)
 Frame = +1

Query: 34  IPAWKDVAEQMRVSNIAMPLYSMLPALTEMAAEKGWTRAYPRVENVGLPAYVLYFFLYMT 213
           IP  K +  QM V+  AMP Y++LP ++E   E+GWT+ +  +   G   Y +Y  +Y+ 
Sbjct: 78  IPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWTKCFASIGEFGWILYFVYIAIYLV 137

Query: 214 SVEFGVYWMHRILH-WGPLYKYLHWDHHKYNKEHTLSPFAGLAFHPLDGILQAVPYAWTL 390
            VEFG+YWMHR LH   PLYKYLH  HH YNK++TLSPFAGLAFHP+DGILQAVP+   L
Sbjct: 138 FVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIAL 197

Query: 391 LYCPMHFLTHELLLFATGVWTTNIHDCLHGHVWPIMGAGYHTIHHTTYKHNYGHYFIFMD 570
              P+HF TH  LLF   +WT NIHDC+HG++WP+MGAGYHTIHHTTYKHNYGHY I+MD
Sbjct: 198 FIVPIHFTTHIGLLFMEAIWTANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWMD 257

Query: 571 YLMGTLTTPEQYDADKAARATKA 639
           ++ G+L  P   + D      KA
Sbjct: 258 WMFGSLRDPLLEEDDNKDSFKKA 280

>pir||S71251 C-5 sterol desaturase (EC 1.-.-.-) - Arabidopsis thaliana
           gi|1061038|emb|CAA62079.1| sterol-C5-desaturase
           [Arabidopsis thaliana]
          Length = 281

 Score =  245 bits (625), Expect = 9e-64
 Identities = 112/203 (55%), Positives = 141/203 (69%), Gaps = 1/203 (0%)
 Frame = +1

Query: 34  IPAWKDVAEQMRVSNIAMPLYSMLPALTEMAAEKGWTRAYPRVENVGLPAYVLYFFLYMT 213
           IP  K +  QM V+  AMP Y++LP ++E   E+GWT+ +  +   G   Y +Y  +Y+ 
Sbjct: 78  IPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWTKCFASIGEFGWILYFVYIAIYLV 137

Query: 214 SVEFGVYWMHRILH-WGPLYKYLHWDHHKYNKEHTLSPFAGLAFHPLDGILQAVPYAWTL 390
            VEFG+YWMHR LH   PLYKYLH  HH YNK++TLSPFAGLAFHP+DGILQAVP+   L
Sbjct: 138 FVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIAL 197

Query: 391 LYCPMHFLTHELLLFATGVWTTNIHDCLHGHVWPIMGAGYHTIHHTTYKHNYGHYFIFMD 570
              P+HF TH  LLF   +W  NIHDC+HG++WP+MGAGYHTIHHTTYKHNYGHY I+MD
Sbjct: 198 FIVPIHFTTHIGLLFMEAIWAANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWMD 257

Query: 571 YLMGTLTTPEQYDADKAARATKA 639
           ++ G+L  P   + D      KA
Sbjct: 258 WMFGSLRDPLLEEDDNKDSFKKA 280

>gb|AAM66060.1| sterol-C5-desaturase [Arabidopsis thaliana]
          Length = 281

 Score =  245 bits (625), Expect = 9e-64
 Identities = 112/203 (55%), Positives = 141/203 (69%), Gaps = 1/203 (0%)
 Frame = +1

Query: 34  IPAWKDVAEQMRVSNIAMPLYSMLPALTEMAAEKGWTRAYPRVENVGLPAYVLYFFLYMT 213
           IP  K +  QM V+  AMP Y++LP ++E   E+GW + +  +   G   Y +Y  +Y+ 
Sbjct: 78  IPTIKAMRLQMFVAMKAMPWYTLLPTVSESMIERGWXKCFASIGEFGWILYFVYIAIYLV 137

Query: 214 SVEFGVYWMHRILH-WGPLYKYLHWDHHKYNKEHTLSPFAGLAFHPLDGILQAVPYAWTL 390
            VEFG+YWMHR LH   PLYKYLH  HH YNK++TLSPFAGLAFHP+DGILQAVP+   L
Sbjct: 138 FVEFGIYWMHRELHDIKPLYKYLHATHHIYNKQNTLSPFAGLAFHPVDGILQAVPHVIAL 197

Query: 391 LYCPMHFLTHELLLFATGVWTTNIHDCLHGHVWPIMGAGYHTIHHTTYKHNYGHYFIFMD 570
              P+HF TH  LLF   +WT NIHDC+HG++WP+MGAGYHTIHHTTYKHNYGHY I+MD
Sbjct: 198 FIVPIHFTTHIGLLFMEAIWTANIHDCIHGNIWPVMGAGYHTIHHTTYKHNYGHYTIWMD 257

Query: 571 YLMGTLTTPEQYDADKAARATKA 639
           ++ G+L  P   + D      KA
Sbjct: 258 WMFGSLRDPLLEEDDNKDSFKKA 280



EST assemble image


clone accession position
1 MX008b11_r BP086407 1 388
2 LC047b02_r AV621951 248 721
3 LC044a11_r AV622014 400 719
4 LC008d02_r AV619436 432 970




Chlamydomonas reinhardtii
Kazusa DNA Research Institute