KCC002778A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002778A_C01 KCC002778A_c01
AATTCCGCCGAAACTCGTTCACTAGGGTGGTGGTGCATCACACAATCCCAACACATGATG
GCAGCACACAATCCCAACACACGATGCCGCCCATGCTGTAATGTATCTCATCCTGCAGAG
GTTAAGCAAACAACTGTTATTCTAGCACTCAAAACTATGGTGCCCACATTGTACTGTCCG
TAACTGCACAACATCATGTGAAGTCCCTTGTGGGAAAAGCGGGCTGCGCCCCATCATGTC
TACCGTCTGAGCTACAGGTTATCAAACTTCATCTCCTAGACGTAGCCGGGGTGGGTTTGA
GCAGGCACTACACGCCGCGTGTCCATTCAGTCAGTCCAGGAACCAAAACATAACATGTCA
GAGCAGCCTCACTACTCACTACTCCTGCAGTCATGCTGCTTCCCATCGCATGCTTGGCTC
GCCCGCAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002778A_C01 KCC002778A_c01
         (429 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_312702.1| ENSANGP00000020617 [Anopheles gambiae] gi|30177...    32  2.0
ref|NP_296292.1| hypothetical protein [Deinococcus radiodurans] ...    31  3.5
ref|NP_057090.2| CGI58 protein; comparative gene identification ...    30  5.9
gb|AAD34053.1|AF151816_1 CGI-58 protein [Homo sapiens]                 30  5.9
ref|NP_666479.1| olfactory receptor MOR224-10 [Mus musculus] gi|...    30  5.9

>ref|XP_312702.1| ENSANGP00000020617 [Anopheles gambiae] gi|30177261|gb|EAA08258.2|
           ENSANGP00000020617 [Anopheles gambiae str. PEST]
          Length = 465

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 231 PSCLPSELQVIKLHLLDVAGVG--LSRHYTPRVHSV 332
           P CL  E   I++ LL+++GVG   S H  P+VH+V
Sbjct: 68  PLCLKDETGSIRVSLLEISGVGQNSSVHIIPKVHTV 103

>ref|NP_296292.1| hypothetical protein [Deinococcus radiodurans]
           gi|7472659|pir||F75257 hypothetical protein -
           Deinococcus radiodurans (strain R1)
           gi|6460403|gb|AAF12116.1|AE002086_8 hypothetical protein
           [Deinococcus radiodurans]
          Length = 496

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 27/83 (32%), Positives = 38/83 (45%)
 Frame = +3

Query: 162 AHIVLSVTAQHHVKSLVGKAGCAPSCLPSELQVIKLHLLDVAGVGLSRHYTPRVHSVSPG 341
           AH + + T+     S   +   AP  LP  L       + +A   L     P V SV+P 
Sbjct: 100 AHQLAAETSSEIASSATLRGVLAPPALPRSLAASVSQDIALARQ-LGAAPLPSVASVAPA 158

Query: 342 TKT*HVRAASLLTTPAVMLLPIA 410
             +  +RAA+LL TP  ML P+A
Sbjct: 159 VLS-DLRAAALLQTPPPMLRPVA 180

>ref|NP_057090.2| CGI58 protein; comparative gene identification 58 [Homo sapiens]
           gi|17129491|emb|CAC70164.1| CGI-58 protein [Homo
           sapiens] gi|17148545|emb|CAD12731.1| CGI-58 protein
           [Homo sapiens] gi|18314391|gb|AAH21958.1| CGI58 protein
           [Homo sapiens]
          Length = 349

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = +1

Query: 25  GW---WCITQSQHMMAAHNPNTRCRPCCNVSHPAEVKQTTVILALK 153
           GW   WC T   H+  A     +C PC     P  +     I  LK
Sbjct: 22  GWLPTWCPTSISHLKEAEEKMLKCVPCTYKKEPVRISNGNKIWTLK 67

>gb|AAD34053.1|AF151816_1 CGI-58 protein [Homo sapiens]
          Length = 349

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = +1

Query: 25  GW---WCITQSQHMMAAHNPNTRCRPCCNVSHPAEVKQTTVILALK 153
           GW   WC T   H+  A     +C PC     P  +     I  LK
Sbjct: 22  GWLPTWCPTSISHLKEAEEKMLKCVPCTYKKEPVRISNGNKIWTLK 67

>ref|NP_666479.1| olfactory receptor MOR224-10 [Mus musculus]
           gi|18480750|gb|AAL61389.1| olfactory receptor MOR224-10
           [Mus musculus]
          Length = 326

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 18/39 (46%), Positives = 25/39 (63%)
 Frame = -3

Query: 364 ALTCYVLVPGLTEWTRGV*CLLKPTPATSRR*SLITCSS 248
           ALTC++LV  LT +TR V  +LK   +  RR +  TCS+
Sbjct: 219 ALTCFLLV--LTSYTRIVISILKIRSSEGRRRAFSTCSA 255



EST assemble image


clone accession position
1 MX203f07_r BP089247 1 461
2 LC007d02_r AV619368 39 539




Chlamydomonas reinhardtii
Kazusa DNA Research Institute