KCC002777A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002777A_C01 KCC002777A_c01
tccatggCTGGCACTGAGTATACTCCCAGTTGGCCTGGCTTTCAGCGTCTTGAGTCTGTG
CAGGAGGTTCTTGACCGCAACAAGCTCCTAATTAGCGAAATCAACCGCAACCACGAGCTG
CGTACTCCGGAATCTCTCCTACGGAACGTGACGCTTATCCGCGAGCTAAATGGCAACATG
GCCACAGTAGTTGAGGCGTATCGGCAACTCGCAACGCTGATTGACATACCGGGCTCTGCG
CTTGCAGCTAACTAGCAATAGAAAGGGTTCCGCTCTGTTTGCTTCATCTCCTCCCAGATC
CTAGGTCAGCTTCGCTCCCCGTGATTTAGGTCCGAATACGCTTACAGTTCCCAGGGCGCA
ATCTACCCACAACCTTCACAGCCCGAACACAGCAGCCAATTCATCCACTGAACATGCTGC
TCCAAAGCGCGGTGCGCATGGCCGCGGCTCAGCCTGCGTCCGCCTGGCTGGCCGGCCTTG
CCGGCAGCCTGCGCGGCTTTACCGCATCTTCATCTGCTACTTCCGCTGCAGCTACAGCTG
CTCCTGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002777A_C01 KCC002777A_c01
         (548 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor]        65  8e-10
gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa]           64  1e-09
gb|AAQ73526.1| early flowering 4 [Mesembryanthemum crystallinum]       62  4e-09
ref|NP_564024.1| expressed protein [Arabidopsis thaliana]              61  1e-08
gb|AAF79463.1|AC022492_7 F1L3.15 [Arabidopsis thaliana] gi|96651...    61  1e-08

>gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor]
          Length = 438

 Score = 64.7 bits (156), Expect = 8e-10
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = +1

Query: 58  VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
           VQ +LD+N++LISEIN+NHE R P++L RNV LIRELN N+  VV  Y  L+
Sbjct: 24  VQSLLDQNRMLISEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLS 75

>gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa]
          Length = 117

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 30/52 (57%), Positives = 40/52 (76%)
 Frame = +1

Query: 58  VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
           VQ +LD+N++LI+EIN+NHE R P++L RNV LIRELN N+  VV  Y  L+
Sbjct: 30  VQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLS 81

>gb|AAQ73526.1| early flowering 4 [Mesembryanthemum crystallinum]
          Length = 139

 Score = 62.4 bits (150), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +1

Query: 31  WPGF-QRLESVQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQ 207
           W  F +    VQ VLDRN++LI + N NH+ R P+++++NV +I+ELNGN++ V   Y  
Sbjct: 51  WNAFAESFSKVQSVLDRNRMLIQQANENHQSRVPDNMVKNVAIIQELNGNISKVASIYSD 110

Query: 208 LA 213
           L+
Sbjct: 111 LS 112

>ref|NP_564024.1| expressed protein [Arabidopsis thaliana]
          Length = 114

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +1

Query: 58  VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
           VQ++LD+N+LLI+EIN+NHE + P++L RNV LI+ELN N+  V   Y  L+
Sbjct: 30  VQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

>gb|AAF79463.1|AC022492_7 F1L3.15 [Arabidopsis thaliana] gi|9665116|gb|AAF97300.1|AC007843_3
           Hypothetical protein [Arabidopsis thaliana]
          Length = 141

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +1

Query: 58  VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
           VQ++LD+N+LLI+EIN+NHE + P++L RNV LI+ELN N+  V   Y  L+
Sbjct: 30  VQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81



EST assemble image


clone accession position
1 LC051a10_r AV622545 1 529
2 MX227e01_r BP090685 8 391
3 LC066g03_r AV623646 13 516
4 MX250h12_r BP092197 17 461
5 LC006d06_r AV619305 26 548




Chlamydomonas reinhardtii
Kazusa DNA Research Institute