KCC002777A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002777A_C01 KCC002777A_c01
tccatggCTGGCACTGAGTATACTCCCAGTTGGCCTGGCTTTCAGCGTCTTGAGTCTGTG
CAGGAGGTTCTTGACCGCAACAAGCTCCTAATTAGCGAAATCAACCGCAACCACGAGCTG
CGTACTCCGGAATCTCTCCTACGGAACGTGACGCTTATCCGCGAGCTAAATGGCAACATG
GCCACAGTAGTTGAGGCGTATCGGCAACTCGCAACGCTGATTGACATACCGGGCTCTGCG
CTTGCAGCTAACTAGCAATAGAAAGGGTTCCGCTCTGTTTGCTTCATCTCCTCCCAGATC
CTAGGTCAGCTTCGCTCCCCGTGATTTAGGTCCGAATACGCTTACAGTTCCCAGGGCGCA
ATCTACCCACAACCTTCACAGCCCGAACACAGCAGCCAATTCATCCACTGAACATGCTGC
TCCAAAGCGCGGTGCGCATGGCCGCGGCTCAGCCTGCGTCCGCCTGGCTGGCCGGCCTTG
CCGGCAGCCTGCGCGGCTTTACCGCATCTTCATCTGCTACTTCCGCTGCAGCTACAGCTG
CTCCTGCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002777A_C01 KCC002777A_c01
(548 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor] 65 8e-10
gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa] 64 1e-09
gb|AAQ73526.1| early flowering 4 [Mesembryanthemum crystallinum] 62 4e-09
ref|NP_564024.1| expressed protein [Arabidopsis thaliana] 61 1e-08
gb|AAF79463.1|AC022492_7 F1L3.15 [Arabidopsis thaliana] gi|96651... 61 1e-08
>gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor]
Length = 438
Score = 64.7 bits (156), Expect = 8e-10
Identities = 31/52 (59%), Positives = 40/52 (76%)
Frame = +1
Query: 58 VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
VQ +LD+N++LISEIN+NHE R P++L RNV LIRELN N+ VV Y L+
Sbjct: 24 VQSLLDQNRMLISEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLS 75
>gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa]
Length = 117
Score = 64.3 bits (155), Expect = 1e-09
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = +1
Query: 58 VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
VQ +LD+N++LI+EIN+NHE R P++L RNV LIRELN N+ VV Y L+
Sbjct: 30 VQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVGLYADLS 81
>gb|AAQ73526.1| early flowering 4 [Mesembryanthemum crystallinum]
Length = 139
Score = 62.4 bits (150), Expect = 4e-09
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 31 WPGF-QRLESVQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQ 207
W F + VQ VLDRN++LI + N NH+ R P+++++NV +I+ELNGN++ V Y
Sbjct: 51 WNAFAESFSKVQSVLDRNRMLIQQANENHQSRVPDNMVKNVAIIQELNGNISKVASIYSD 110
Query: 208 LA 213
L+
Sbjct: 111 LS 112
>ref|NP_564024.1| expressed protein [Arabidopsis thaliana]
Length = 114
Score = 60.8 bits (146), Expect = 1e-08
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +1
Query: 58 VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
VQ++LD+N+LLI+EIN+NHE + P++L RNV LI+ELN N+ V Y L+
Sbjct: 30 VQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81
>gb|AAF79463.1|AC022492_7 F1L3.15 [Arabidopsis thaliana] gi|9665116|gb|AAF97300.1|AC007843_3
Hypothetical protein [Arabidopsis thaliana]
Length = 141
Score = 60.8 bits (146), Expect = 1e-08
Identities = 28/52 (53%), Positives = 40/52 (76%)
Frame = +1
Query: 58 VQEVLDRNKLLISEINRNHELRTPESLLRNVTLIRELNGNMATVVEAYRQLA 213
VQ++LD+N+LLI+EIN+NHE + P++L RNV LI+ELN N+ V Y L+
Sbjct: 30 VQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
LC051a10_r |
AV622545 |
1 |
529 |
2 |
MX227e01_r |
BP090685 |
8 |
391 |
3 |
LC066g03_r |
AV623646 |
13 |
516 |
4 |
MX250h12_r |
BP092197 |
17 |
461 |
5 |
LC006d06_r |
AV619305 |
26 |
548 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute