Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002774A_C01 KCC002774A_c01
(527 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04735.1| OSJNBa0043L24.23 [Oryza sativa (japonica cultiva... 69 3e-11
ref|NP_683275.2| basic transcripion factor 2, 44kD subunit -rela... 58 9e-08
gb|AAO51083.1| similar to Homo sapiens (Human). TFIIH basal tran... 45 4e-04
dbj|BAA31745.1| SSL1 [Schizosaccharomyces pombe] 41 0.011
ref|NP_587800.1| tfiih subunit p47 [Schizosaccharomyces pombe] g... 41 0.011
>emb|CAE04735.1| OSJNBa0043L24.23 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 69.3 bits (168), Expect = 3e-11
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
Frame = +2
Query: 251 AAAERRDDLGIEDGDDDDIDENELRRQEEAYQRQYENEQTWDQLQEDEHGNL--FVDKTA 424
A+A RR+ ED DD++ +E+ R EA++R Y ++++W+ LQEDE G L KT
Sbjct: 17 ASARRRNH---EDDDDEEEEESGEGRVLEAWERAYADDRSWEALQEDESGLLRPIDTKTL 73
Query: 425 EQRARRQRLL---SAAQSARIRKGMIRYVLLVVDLSR 526
R+RLL +A+ +ARI+KG+IRY+ +V+DLSR
Sbjct: 74 VHAQYRRRLLLRSAASAAARIQKGLIRYLYIVIDLSR 110
>ref|NP_683275.2| basic transcripion factor 2, 44kD subunit -related [Arabidopsis
thaliana] gi|25347846|pir||E86184 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4056421|gb|AAC97995.1|AAC97995 Similar to gb|Z30094
basic transcripion factor 2, 44 kD subunit from Homo
sapiens. EST gb|W43325 comes from this gene.
[Arabidopsis thaliana]
gi|22087278|gb|AAM90909.1|AF499443_1 p44/SSL1-like
protein [Arabidopsis thaliana]
Length = 421
Score = 57.8 bits (138), Expect = 9e-08
Identities = 36/83 (43%), Positives = 54/83 (64%), Gaps = 10/83 (12%)
Frame = +2
Query: 308 DENELRRQEEA-----YQRQYENEQTWDQLQEDEHGNLF-VDKTA---EQRARRQRLLSA 460
DE E E+A ++R Y ++++W++LQEDE G L +D +A Q RR R+LSA
Sbjct: 10 DEREEEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSA 69
Query: 461 AQSA-RIRKGMIRYVLLVVDLSR 526
A + RI+KG+IRY+ +V+D SR
Sbjct: 70 AAAGTRIQKGLIRYLYIVIDFSR 92
>gb|AAO51083.1| similar to Homo sapiens (Human). TFIIH basal transcription factor
complex p44 subunit (Basic transcription factor 2 44 kDa
subunit) (BTF2-p44) (General transcription factor IIH
polypeptide 2) [Dictyostelium discoideum]
Length = 461
Score = 45.4 bits (106), Expect = 4e-04
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Frame = +2
Query: 293 DDDDIDENELRRQEEAYQRQY--EN--EQTWDQLQEDEHGNLFVDKTAEQRARRQRLLSA 460
DD+D + L+ +E +Y EN E+TW + EDEHG L E+ R +RL +
Sbjct: 21 DDEDGPAHVLQTNDEDGTNKYKWENRFEKTWLTIDEDEHG-LRPSNQEERNTRNRRLKNK 79
Query: 461 ------AQSARIRKGMIRYVLLVVDLSR 526
+Q R+R+GM R++ L++DLS+
Sbjct: 80 DRDGILSQDQRVRRGMQRHLCLILDLSK 107
>dbj|BAA31745.1| SSL1 [Schizosaccharomyces pombe]
Length = 392
Score = 40.8 bits (94), Expect = 0.011
Identities = 24/64 (37%), Positives = 41/64 (63%), Gaps = 1/64 (1%)
Frame = +2
Query: 335 EAYQRQYENEQTWDQLQEDEHGNLF-VDKTAEQRARRQRLLSAAQSARIRKGMIRYVLLV 511
E Y + E +++WD +QED G+L V Q +R+RLL + +++G+IR+++LV
Sbjct: 6 EGYTWEGEYQRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLL--RDTTPLQRGIIRHMVLV 63
Query: 512 VDLS 523
+DLS
Sbjct: 64 LDLS 67
>ref|NP_587800.1| tfiih subunit p47 [Schizosaccharomyces pombe]
gi|26400388|sp|O74995|TF47_SCHPO TFIIH basal
transcription factor complex p47 subunit (Suppressor of
stem-loop protein 1 homolog) (SSL1 homolog)
gi|11281650|pir||T43534 transcription factor TFIIH chain
p47 - fission yeast (Schizosaccharomyces pombe)
gi|3406059|gb|AAC29144.1| TFIIH subunit p47
[Schizosaccharomyces pombe] gi|3560161|emb|CAA20673.1|
SPCC1682.07 [Schizosaccharomyces pombe]
Length = 421
Score = 40.8 bits (94), Expect = 0.011
Identities = 24/64 (37%), Positives = 41/64 (63%), Gaps = 1/64 (1%)
Frame = +2
Query: 335 EAYQRQYENEQTWDQLQEDEHGNLF-VDKTAEQRARRQRLLSAAQSARIRKGMIRYVLLV 511
E Y + E +++WD +QED G+L V Q +R+RLL + +++G+IR+++LV
Sbjct: 35 EGYTWEGEYQRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLL--RDTTPLQRGIIRHMVLV 92
Query: 512 VDLS 523
+DLS
Sbjct: 93 LDLS 96
