KCC002768A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002768A_C01 KCC002768A_c01
TGGCCCTCGCTCCCTGCAGCTTGTCTCGCGTAGCTTGCCCTCTCGTCGCACTTCAGCTTT
CTAGCGCGCCCAATACATGTCCAACCACACTCACGACAACCATATTATGTGGCGTAATAA
CGAGTCCAAGGTTGTCCACGCTTCGTTCCTGTCCATGCTCGCCGACACCCGCTCCACGAT
GATCCTGAACATCACCGAGTGCTCCAAAGACAACAAAGAAGCCCAACTGCAAAAACAAGG
GAAACACGAGCGCCGACTATGATGCTCTTCAGTCGCTAAGTGACCATCGAGCCTGCGCTG
AACGTAGGCTGATAGACGTCTGGAAGGGCGAGGCGCGCCGACACGGGCAGCGCCCCCACC
AGATCGCGCGCTGGATCCGGCGCAAGGCGGGGCCCAACATCTGCGTTTGGCGCCGCCTGC
AGGACGGGAGCCTGGGCTGCAGCGTTCCGTGTGTGTGCTGCCGCGTGCTGCTGAGCTCGC
TTGACCTGCGAGTGAGCTGTGTGCGCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002768A_C01 KCC002768A_c01
         (509 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB56065.1| P0665A11.11 [Oryza sativa (japonica cultivar-gro...    37  0.14
ref|ZP_00059254.1| COG2301: Citrate lyase beta subunit [Thermobi...    36  0.25
gb|AAM18724.1|AC092548_2 putative receptor kinase-like protein [...    36  0.25
pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Dro...    36  0.32
ref|ZP_00025741.1| COG4964: Flp pilus assembly protein, secretin...    36  0.32

>dbj|BAB56065.1| P0665A11.11 [Oryza sativa (japonica cultivar-group)]
          Length = 629

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = -3

Query: 507 RAHSSLAGQASSAARGSTHTERCSPGSRPAGGAKRRCWAPPCAGSSARSGGGAARVG--A 334
           R    L G     +       RC+ G       +RR WAP      A  GGGA   G   
Sbjct: 342 RGTDGLVGARKERSSRRPSAPRCAQGGGGGQEERRRLWAPTSFPPDADGGGGADSTGHSP 401

Query: 333 PRPSRRLSAYVQRR 292
           PR  R+  A  QRR
Sbjct: 402 PRSGRKRGAGQQRR 415

>ref|ZP_00059254.1| COG2301: Citrate lyase beta subunit [Thermobifida fusca]
          Length = 466

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 19/98 (19%)
 Frame = -3

Query: 507 RAHSSLAGQASSAARGSTHT------ERCSPGSRPAGGAKRR----------CWAPPCAG 376
           R  SS A   SSA   ST T       RC+ G  P    +RR          CWA     
Sbjct: 3   RTRSSSAASRSSAVSQSTATYSSSRSPRCASGPGPCSSQRRRTAGRSIRVGWCWASGTLS 62

Query: 375 SSARSGG--GAARVGAPRPSR-RLSAYVQRRLDGHLAT 271
            S    G  G+ R    RPSR R S   Q  L G+ +T
Sbjct: 63  MSGEGAGSAGSGRTPTTRPSRTRTSNVPQCALVGYAST 100

>gb|AAM18724.1|AC092548_2 putative receptor kinase-like protein [Oryza sativa (japonica
           cultivar-group)] gi|31431552|gb|AAP53310.1| putative
           receptor kinase-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 374

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
 Frame = -3

Query: 492 LAGQASSAARGSTHTERCSPGSRPAGGAKRRCWAPP---------CAGSSARSGGGAARV 340
           +AG+A SA   +   +  S  +  A  A RRC +P          CA SS  SG   A V
Sbjct: 51  VAGRAVSAQFATAGADLSSGAAAAASAAGRRCTSPTSHRARARSGCAPSSPGSGSSRAAV 110

Query: 339 GAPRPSRRLSAYVQRRLDGHLAT 271
              R SR  + +V R  +G  +T
Sbjct: 111 QLRRVSRGCALFVYRAAEGASST 133

>pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Drosophila
           virilis) gi|433482|emb|CAA53796.1| major larval glue
           protein [Drosophila virilis] gi|450903|emb|CAA82672.1|
           glue protein [Drosophila virilis]
           gi|1091592|prf||2021274B glue protein
          Length = 232

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
 Frame = +3

Query: 12  PCSLSRVACPLVALQLSS-APNT--------CPTTLTTTIL-CGVITSPR-LSTLRSCPC 158
           PC  +   CP      ++  P T        CPTT TTT   C   T+ R  +T  + PC
Sbjct: 40  PCETTTTPCPTTTTTTTTPCPTTTTTTTTTPCPTTTTTTTTPCPTTTTTRTTTTTTTTPC 99

Query: 159 SPTPAPR*S*TSPSAPKTTKKPNCKNKGNTS 251
             T   R + T  +  +TT  P    +  T+
Sbjct: 100 PTTTTTRTTTTPTTTTRTTTTPTTTTRTTTT 130

>ref|ZP_00025741.1| COG4964: Flp pilus assembly protein, secretin CpaC [Ralstonia
           metallidurans]
          Length = 620

 Score = 35.8 bits (81), Expect = 0.32
 Identities = 22/41 (53%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
 Frame = -1

Query: 440 AAQAPVLQAAPNADVGPRLAPDPARDLVGALPV---SARLA 327
           A  AP    AP A VGPR    PARDLV A P    SAR+A
Sbjct: 554 APSAPAASPAPVATVGPRPPQGPARDLVAATPPEDNSARVA 594



EST assemble image


clone accession position
1 LC004f12_r AV619170 1 444
2 LC019d07_r AV620239 1 509




Chlamydomonas reinhardtii
Kazusa DNA Research Institute