KCC002764A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002764A_C01 KCC002764A_c01
tcataTCGCATTATGTAAAATAAACTGCAAACATGCGGAGCATAAGTCAACTTGGTGTGT
TTGTTGGCGTCTTTCTCGGGACAGTGGGCTTTCTTAATGTGCGAATGCACTTACAACACG
CATCACACCAAAAGCTTCTTCACCTAGATCATGGGCACACGCAGTCGTCGCCCGTAGCTG
CAGCCTCAGCGCTGGGGCGCAAGGACCCGGTTAAGCCGGTTGCTGTCCATTCGACAAACG
TTAGCGAGGAGAGCTATCCCTTTAAGAGTGTGGAGGAGGTCAACATTGGAGTCCAAACCG
GGCATTTCTTTGGCAACGACTTCGAGGGGTTGCAGCAAGGCTGCACGATAGGGAAGACGA
CGATTAATTGCCGGTATGGGGTGGGGATCAACCCGGAGACAGCAGACGCGCTGTGGTACC
ACATCCCATCAATGGGGGGGTCAAGCAACGTTAAGAAGCACCACCCCAAGCAGCTTCTCA
TAGGAATGAGCATGGAGTCGTCCGAGTACTACCCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002764A_C01 KCC002764A_c01
         (516 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P03664|VG4_BPFD GENE IV PROTEIN (GPIV) gi|75784|pir||Z4BPFD g...    32  4.8
ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetosp...    32  4.8
sp|P03666|VG4_BPF1 GENE IV PROTEIN (GPIV) gi|75786|pir||Z4BPF1 g...    32  4.8
ref|XP_304347.1| hypothetical protein XP_304347 [Homo sapiens]         32  4.8
ref|NP_294670.1| conserved hypothetical protein [Deinococcus rad...    32  4.8

>sp|P03664|VG4_BPFD GENE IV PROTEIN (GPIV) gi|75784|pir||Z4BPFD gene IV protein - phage
           fd (strain 478, Heidelberg) gi|14941|emb|CAA23854.1|
           GENE IV [Enterobacteria phage fd]
           gi|215404|gb|AAA32312.1| IV (morphogenesis)
           gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic
           protein IV [Filamentous phage cloning vector fd-tet]
           gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage
           display vector fMCS1] gi|21667075|gb|AAM73892.1|
           morphogenetic protein IV [Filamentous phage display
           vector f8-5] gi|21667089|gb|AAM73904.1| morphogenetic
           protein IV [Filamentous phage display vector c8-4]
           gi|223541|prf||0812197E DNA,phage
          Length = 426

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 30/91 (32%), Positives = 44/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 42  ISQLGVFVGVFLGTVGFLNVRMHLQHASHQKLLHLDHGHTQSSPVAAASALGRKDP--VK 215
           +S  G   G+F G V  L+VR  L+  SH K+L +    T S    + S +G+  P    
Sbjct: 239 LSSAGGSFGIFNGDVLGLSVRA-LKTNSHSKILSVPRILTLSGQKGSIS-VGQNVPFITG 296

Query: 216 PVAVHSTNVSEESYPFKSVEEVNIGVQTGHF 308
            V   S NV+    PF++VE  N+G+    F
Sbjct: 297 RVTGESANVNN---PFQTVERQNVGISMSVF 324

>ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum]
          Length = 173

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 25/82 (30%), Positives = 34/82 (40%)
 Frame = +1

Query: 223 LSIRQTLARRAIPLRVWRRSTLESKPGISLATTSRGCSKAAR*GRRRLIAGMGWGSTRRQ 402
           +SI Q   R  I LRVW R       G++LA  +  C+ A    R RLI     G + R 
Sbjct: 83  ISIAQVTGRDTIKLRVWERGA-----GLTLACGTAACATAVAASRLRLI-----GRSARI 132

Query: 403 QTRCGTTSHQWGGQATLRSTTP 468
               G  + +W     +  T P
Sbjct: 133 ALPGGELAIEWRADDHVLMTGP 154

>sp|P03666|VG4_BPF1 GENE IV PROTEIN (GPIV) gi|75786|pir||Z4BPF1 gene IV protein - phage
           f1 gi|14983|emb|CAA23875.1| unnamed protein product
           [Enterobacteria phage f1]
          Length = 426

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 30/91 (32%), Positives = 44/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 42  ISQLGVFVGVFLGTVGFLNVRMHLQHASHQKLLHLDHGHTQSSPVAAASALGRKDP--VK 215
           +S  G   G+F G V  L+VR  L+  SH K+L +    T S    + S +G+  P    
Sbjct: 239 LSSAGGSFGIFNGDVLGLSVRA-LKTNSHSKILSVPRILTLSGQKGSIS-VGQNVPFITG 296

Query: 216 PVAVHSTNVSEESYPFKSVEEVNIGVQTGHF 308
            V   S NV+    PF++VE  N+G+    F
Sbjct: 297 RVTGESANVNN---PFQTVERQNVGISMSVF 324

>ref|XP_304347.1| hypothetical protein XP_304347 [Homo sapiens]
          Length = 187

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 21/53 (39%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
 Frame = +2

Query: 266 ECGGGQHWSPNRAFLWQR-LRGVAARLHDREDDD*LP---VWGGDQPGDSRRA 412
           ECGG  H+  N A  W+R     AA    R D + L    + G  QP DSR A
Sbjct: 65  ECGGHWHYKVNTALCWKRKTNREAAAFFSRNDTNSLQLLRLMGMQQPDDSRDA 117

>ref|NP_294670.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471299|pir||A75456 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6458670|gb|AAF10522.1|AE001947_5 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 343

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 27/84 (32%), Positives = 36/84 (42%)
 Frame = +3

Query: 51  LGVFVGVFLGTVGFLNVRMHLQHASHQKLLHLDHGHTQSSPVAAASALGRKDPVKPVAVH 230
           LG+ VG F+      + R  L  A + K  HLD+    +  +    AL +  PVK VA H
Sbjct: 159 LGIGVGDFVS----FDARPRLTPAGYVKARHLDNKAAVAVFLTVTRALLQSPPVKTVAFH 214

Query: 231 STNVSEESYPFKSVEEVNIGVQTG 302
            T          + EEV  G  TG
Sbjct: 215 VT----------TYEEVGHGAATG 228



EST assemble image


clone accession position
1 LC004d06_r AV619144 1 515
2 LC015h06_r AV619986 6 516




Chlamydomonas reinhardtii
Kazusa DNA Research Institute