KCC002757A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002757A_C01 KCC002757A_c01
ccgcgtgcaagctgccagccccaggaaaatatgcatgatacgggttcagtcccacaccag
ctatcggtcgtttggctgtgCAATGCGGCCTCCTGAGCCACGCAACCCGCACACAGGTGC
TTCCCATCCACCACCCCGCGTGCATCCACCCACTCCACCCCGCCATATCCACCCACGCAC
CCGTGAGTCGGGCTTCACCAGCTCCAGCTGCAGCTCCTCGCACCAGTCGCGATACGCCCG
CGCCGCGAACTTGACGTCGCTGGCCACCACCCCCAGCAACACCTCGACGTCCGGGTGGCC
TGCACCCAGCCAGCCGGCCGGCACGCTGGGGTCTGAGTAGGCAAGCTGCGAGCACGTTGC
ATAGGGCAGCGTAAGAGGCGCTCAAGAGCAGCCCGAACCAGATGGCGAGAGTGTTACTGC
AGCATTGCGCAAGATGCGGTAACGTTCAACTGACCTTGAGGGCTTCCCGGAGCCGCTGCC
TGCTTGCAGCCGAGCTCAGGTACGGAGCCTGGGCAATGCCGCGGAACTCCTTCAGAGTGA
AGTCTCGCAGCAGCTCCCAGGCTGCTATGTTTGGGTCCTAAAAAGAAGGGATAGCAGCTG
TCATTTTTGGGGCCACGAGACGGTATGCATGCGGGCAGCAGCCATCTTAGATACGTACCG
GTGTGCAGGTGCCGGGCAAGTCCGGGGCAACGGCTCCCGCAGGCGACTGTGGCGGTGTTG
CTGTAGGACAGCGCCATTGAACATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002757A_C01 KCC002757A_c01
         (745 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC39319.1| VMP4 protein [Volvox carteri f. nagariensis]           34  2e-04
gb|AAA87047.1| pistil extensin-like protein                            38  2e-04
gb|AAF21602.1|AF009223_1 kexin-like serine endoprotease [Pneumoc...    45  0.001
gb|AAM33652.1|AF508983_1 mastigoneme-like protein [Chlamydomonas...    37  0.001
gb|AAG14273.1|AF243438_88 RS1 immediate-early gene transactivato...    45  0.002

>emb|CAC39319.1| VMP4 protein [Volvox carteri f. nagariensis]
          Length = 1143

 Score = 33.9 bits (76), Expect(2) = 2e-04
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 177 APVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRPGGLHPASRPAR 326
           +P    SP P  +P      P P +    PPPP +PR P    P  RP R
Sbjct: 554 SPPPPPSPPPPPSPPPPPSPPPPPS----PPPPPSPRHPPSPPPRPRPPR 599

 Score = 33.5 bits (75), Expect(2) = 2e-04
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 86  RPPEPRNPHTGASHPPPRVHPPTPP 160
           RPP PR P      PPP   PP PP
Sbjct: 511 RPPSPRPPRPSPPSPPPPPSPPPPP 535

 Score = 32.7 bits (73), Expect(2) = 0.032
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 177 APVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRPGGLHPASRPAR 326
           +P    SP P  +P      P P +    PPPP+ P  P   HP S P R
Sbjct: 548 SPPPPPSPPPPPSPPPPPSPPPPPS---PPPPPSPPPPPSPRHPPSPPPR 594

 Score = 29.6 bits (65), Expect(2) = 3.9
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 150 PLHPAISTHAPVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRPGGLHPASRP 320
           P  P  S  +P    SP P  +P      P P +    PPPP+ P  P    P S P
Sbjct: 515 PRPPRPSPPSPPPPPSPPPPPSPPPPPSPPPPPSP---PPPPSPPPPPSPPPPPSPP 568

 Score = 26.9 bits (58), Expect(2) = 1.4
 Identities = 15/40 (37%), Positives = 18/40 (44%), Gaps = 1/40 (2%)
 Frame = +3

Query: 177 APVSRASPAPAAAPR-TSRDTPAPRT*RRWPPPPATPRRP 293
           +P    SP P  +PR      P PR  R  PP P +P  P
Sbjct: 572 SPPPPPSPPPPPSPRHPPSPPPRPRPPRPQPPSPPSPSPP 611

 Score = 26.6 bits (57), Expect(2) = 1.4
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTP 157
           PP P +P    S PPP   PP P
Sbjct: 531 PPPPPSPPPPPSPPPPPSPPPPP 553

 Score = 26.6 bits (57), Expect(2) = 0.032
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTP 157
           PP P +P    S PPP   PP P
Sbjct: 525 PPPPPSPPPPPSPPPPPSPPPPP 547

 Score = 26.6 bits (57), Expect(2) = 3.9
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTP 157
           PP P +P    S PPP   PP P
Sbjct: 543 PPPPPSPPPPPSPPPPPSPPPPP 565

 Score = 25.4 bits (54), Expect(2) = 3.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +3

Query: 177 APVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRPGGLHPASRPA 323
           +P    SP P  +P      P P + R  PP P    RP    P S P+
Sbjct: 560 SPPPPPSPPPPPSPPPPPSPPPPPSPRH-PPSPPPRPRPPRPQPPSPPS 607

 Score = 22.3 bits (46), Expect(2) = 3.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTPP 160
           PP P    T    P PR   P+PP
Sbjct: 500 PPPPSPLLTSPRPPSPRPPRPSPP 523

>gb|AAA87047.1| pistil extensin-like protein
          Length = 430

 Score = 38.1 bits (87), Expect(2) = 2e-04
 Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
 Frame = +3

Query: 159 PAISTHAPVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATP-RRPGGLHPASRPA 323
           PA  +  P    SP+PA  P T +  P PR  +  PPPP  P   P  + P+  PA
Sbjct: 200 PAKQSPPPPRAPSPSPATQPPTKQPPPPPRAKKSPPPPPPPPVAYPPVMAPSPSPA 255

 Score = 30.8 bits (68), Expect(2) = 0.007
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTPPR 163
           PP PR P    +  PP   PP PPR
Sbjct: 205 PPPPRAPSPSPATQPPTKQPPPPPR 229

 Score = 30.8 bits (68), Expect(2) = 0.007
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 150 PLHPAISTHAPVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRP 293
           P  P    + PV   SP+PAA P      P+P        PP  PRRP
Sbjct: 236 PPPPPPVAYPPVMAPSPSPAAEPPIVAPFPSPTA-----NPPHVPRRP 278

 Score = 28.9 bits (63), Expect(2) = 2e-04
 Identities = 11/24 (45%), Positives = 12/24 (49%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTPP 160
           P +P  P   A  PPP   PP PP
Sbjct: 165 PCKPSPPDQSAKQPPPAKQPPPPP 188

>gb|AAF21602.1|AF009223_1 kexin-like serine endoprotease [Pneumocystis carinii]
          Length = 166

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +2

Query: 89  PPEPRNPHTGASHPPPRVHPPTPPRHIHPRTRESGFTSSSCSSSHQSRYARAANLTSLAT 268
           PP+P  P      PPP+  PP PP    P  + +  TSS+ ++S            S   
Sbjct: 60  PPQPEPPA-----PPPQPEPPAPPPKPQPEQKPTSITSSTFTTSSSKTKISTIRKASSTK 114

Query: 269 TPSNTSTSGWPAPSQ 313
           T S T TS  P+P++
Sbjct: 115 TSSTTKTSTRPSPTE 129

>gb|AAM33652.1|AF508983_1 mastigoneme-like protein [Chlamydomonas reinhardtii]
          Length = 1997

 Score = 37.4 bits (85), Expect(2) = 0.001
 Identities = 24/62 (38%), Positives = 28/62 (44%)
 Frame = +3

Query: 135  PACIHPLHPAISTHAPVSRASPAPAAAPRTSRDTPAPRT*RRWPPPPATPRRPGGLHPAS 314
            PA   P  P   +  P S A P+P   P +   +P P      PP P  PRRP   HPA 
Sbjct: 1877 PASPRPPSPNPPSPRPPSPAPPSPNPPPTSQPPSPPPSP---PPPRPPPPRRP---HPAR 1930

Query: 315  RP 320
            RP
Sbjct: 1931 RP 1932

 Score = 32.7 bits (73), Expect = 6.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 86   RPPEPRNPHTGASHPPPRVHPPTPP 160
            RPP PR PH  A  PP  + PP PP
Sbjct: 1919 RPPPPRRPHP-ARRPPTALPPPPPP 1942

 Score = 26.6 bits (57), Expect(2) = 0.001
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 95   EPRNPHTGASHPPPRVHPPTPP 160
            +P+   T  S PPP   PP PP
Sbjct: 1855 KPKTARTEQSPPPPSPSPPPPP 1876

>gb|AAG14273.1|AF243438_88 RS1 immediate-early gene transactivator-like protein [Gallid
            herpesvirus 2] gi|10180796|gb|AAG14284.1|AF243438_99 RS1
            immediate-early gene transactivator ICP4-like protein
            [Gallid herpesvirus 2]
          Length = 2321

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
 Frame = +2

Query: 92   PEPRNPHTGASH-----PPPRVHPPTPPRHIHPRTRESGFTSSSCSSSHQSRYARAANLT 256
            P PR P T  S+      PPR +PP+   H     R  G  S S SSS  S  + + + +
Sbjct: 1026 PRPRGPETSPSNEHIIISPPR-NPPSNTTH-----RNVGHVSRSPSSSSSSSSSSSPSSS 1079

Query: 257  SLATTPSNTSTSGWPAPSQPAGTLGSE*ASCEHVA*GSVRGAQEQPEPDGESVTAALRKM 436
            SL   PS+ S+S  P+PS P     ++ +S      GS RG +  P+  G   +   RK+
Sbjct: 1080 SL-IVPSSPSSSRSPSPSPPRPR--ADCSSRPRRGRGSNRGGRSGPQSKGRKTSPRTRKL 1136



EST assemble image


clone accession position
1 LC003h03_r AV619107 1 564
2 LCL100d08_r AV631824 235 745




Chlamydomonas reinhardtii
Kazusa DNA Research Institute