KCC002756A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002756A_C01 KCC002756A_c01
TTATACTTACAAAATAGCCTCAAAACACATCGCCAAGCCAACTTGCTAAGTTCTGCCCTC
TACCGCTCACGTATTCATTGCAGCGCTTTCAGAACATAGTGGATACTGTAATAATAAAAG
TATAACACCAGCAGAAGATAGCGCCGGTGTCGCGCTGGTTGCGCTGCTGCGCGGTTAGCC
CTCGCGTAGCAGCGATTTTCTGGAATTAAGCATACTTTCAGCACCTAAGCATGTCATCCA
ACGTCCGGCAGCTGATCAGCCGGCTGATTCCCCCAGCTCGGAAGCAGTTTGAGCACCTAC
AAGCGCACCGACGCGATGTGGTCTGGGGCGACACACAAATAACGCTTAGAGTGCGACAAT
ACCCGAAGAGCAAGGACGAGCGTGTGTCCCTAGTGCTGCCAAACTGGCATCGCGTGCGCC
TCTGGAGCGAGGCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002756A_C01 KCC002756A_c01
         (436 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_492436.1| anmx crilo protein arginine n-methyltransferase...    33  0.69
ref|NP_004747.1| numb homolog (Drosophila)-like; numb (Drosophil...    33  0.90
gb|AAH01794.1| NUMBL protein [Homo sapiens] gi|32879957|gb|AAP88...    33  0.90
emb|CAC85962.1| 5-HT2B serotonin receptor [Tetraodon fluviatilis...    32  2.6
emb|CAC86247.1| 5-HT2B serotonin receptor [Tetraodon fluviatilis]      32  2.6

>ref|NP_492436.1| anmx crilo protein arginine n-methyltransferase (71.2 kD) (1J638)
           [Caenorhabditis elegans] gi|7509074|pir||T26236
           hypothetical protein W06D4.4 - Caenorhabditis elegans
           gi|3947589|emb|CAA22252.1| Hypothetical protein W06D4.4
           [Caenorhabditis elegans]
          Length = 630

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 5   TYKIASKHIAKPTC*VLPSTAHVFIAALSEH 97
           T+K A + +AKP C V+PST +V+I  +  H
Sbjct: 154 TFKEALERLAKPGCRVVPSTGNVYIVPVESH 184

>ref|NP_004747.1| numb homolog (Drosophila)-like; numb (Drosophila) homolog-like
           [Homo sapiens] gi|14194976|sp|Q9Y6R0|NMBL_HUMAN
           Numb-like protein (Numb-R) gi|4102707|gb|AAD01549.1|
           NUMB-R protein [Homo sapiens]
          Length = 609

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +2

Query: 242 RPAADQPADSPSSEAV*APTSAPTRCGLGRHTNNA*SATIPEEQGRACVPSAAKLAS--- 412
           RPA  +  D   +EA  APT AP     G H +   + T P E+G A  P AA   +   
Sbjct: 232 RPAEREAPDKKKAEAAAAPTVAPGPAQPG-HVSPTPATTSPGEKGEAGTPVAAGTTAAAI 290

Query: 413 ---RAPLER 430
               APLE+
Sbjct: 291 PRRHAPLEQ 299

>gb|AAH01794.1| NUMBL protein [Homo sapiens] gi|32879957|gb|AAP88809.1| numb
           homolog (Drosophila)-like [Homo sapiens]
          Length = 568

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +2

Query: 242 RPAADQPADSPSSEAV*APTSAPTRCGLGRHTNNA*SATIPEEQGRACVPSAAKLAS--- 412
           RPA  +  D   +EA  APT AP     G H +   + T P E+G A  P AA   +   
Sbjct: 191 RPAEREAPDKKKAEAAAAPTVAPGPAQPG-HVSPTPATTSPGEKGEAGTPVAAGTTAAAI 249

Query: 413 ---RAPLER 430
               APLE+
Sbjct: 250 PRRHAPLEQ 258

>emb|CAC85962.1| 5-HT2B serotonin receptor [Tetraodon fluviatilis]
           gi|17384398|emb|CAC85912.1| 5-HT2B serotonin receptor
           [Tetraodon fluviatilis]
          Length = 471

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
 Frame = -1

Query: 178 LTAQQRNQRDTGAIFC-----WCYTFIITVSTMF*KRCNEYVSGRGQNLASWLGDV 26
           LT +QR  +  G +F      WC  FI  +++     C+  + GR   + SW+G V
Sbjct: 300 LTNEQRASKVLGIVFLLFVVMWCPFFITNITSALCGPCDANIIGRLMEIFSWVGYV 355

>emb|CAC86247.1| 5-HT2B serotonin receptor [Tetraodon fluviatilis]
          Length = 404

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
 Frame = -1

Query: 178 LTAQQRNQRDTGAIFC-----WCYTFIITVSTMF*KRCNEYVSGRGQNLASWLGDV 26
           LT +QR  +  G +F      WC  FI  +++     C+  + GR   + SW+G V
Sbjct: 233 LTNEQRASKVLGIVFLLFVVMWCPFFITNITSALCGPCDANIIGRLMEIFSWVGYV 288



EST assemble image


clone accession position
1 LC003f09_r AV619092 1 376
2 LC073b02_r AV624112 1 436




Chlamydomonas reinhardtii
Kazusa DNA Research Institute