KCC002747A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002747A_C01 KCC002747A_c01
ACTACACTTCCTCCGGTGCACTCTCTTACACATATACTTTGCTCGCCCGCTGCACTTCGC
TTCTGAGACTGCTTTGTAACCCGCGGCGTTTTCTATTCCGACCTAAGGCACATCACGTTT
CTGTTTGTCTTTATAAACCGTCCGCAAAATGGCATCCGACGCTATGACTATCAACGAGGC
GCTGATGGAGGTGGAGCACACTCCCGCCGTCCACAAGCGCATTCTCGATATCCTGCCCGG
CATTTCGGGTGGCGTGGCACGTGTCATGATCGGCCAGCCCTTTGACACCATCAAGGTGCG
GCTGCAAGTGCTGGGTCAGGGCACTGCCCTGGCGGCCAAGCTGCCGCCCTCGGAGGTGTA
CAAGGACTCGATGGATTGCGTCCGTAAGATGATCAAGAGCGAGGGCCCGCTGTCCTTCTA
CAAGGGCACCGTCGCGCCTCTGGTCGGCAACATGGTCCTGCTGGGCATCCACTTCCCCGT
CTTCTCGTCCGTGCGTAAGATGCTGGAGGGAGATGACCACTACTCCAACTTCTCTCACGC
CAACGTCCTGCTGTCGGGCGCGGCTGCCGGTGCCGCCGGTTCTCTGATCTCTGCCCCCGT
GGAGCTGGTCCGCACCAAGATGCAGATGCAGCGCCGCGCCGCTCTGGCTGGCACGGTGGC
CGCCGGCGCCGCCGCCTCGGCTGGCGCCGAGGAGTTCTACAAGGGCTCGCTGGACTGCTT
CAAGCAGGTCATGTCCAAGCACGGCATCAAGGGCCTGTACCGTGGATTCTCCTCCACCAT
CCTGCGTGACATGCAGGGCTACGCCTGGTTCTTCCTGGGCTACGAGGCCACTGTCAACCA
CTTCCTGCAGAACGCCGGCCCCGGTGTGCACACCAAGGCCGACCTCAACTACCTGCAGGT
CATGGCCGCCGGCGTGGTGGCGGGCTTCGGCCTGTGGGGCTCCATGTTCCCCATCGACAC
CATCAAGTCCAAGATGCAGGCCGACTCGTTCGTCAAGCCCCAGTACAGCACTACCATTGA
CTGCGTCAAGCAGGTGATCGCCAGCGAGGGCCAGGCGGGTCTGTGGCGCGGCTTCTCCGC
CGCCATGTACCGCGCCATCCCCGTCAACGCCGGCATCTTCCTGGCGGTGGAGGGCACGCG
CCAGGGCATCAAGTGGTACGAGGAGAACGTGGAGCACATCTACGGCGGCGTGATCGGCCC
CGCCACCGCTCAGTAAGCGGCTGCCATTGGCACAGCTTCGCAGCCGCTAGTATTCGTTTG
CGTGCTGTAAAGCTGAGCAAGGCTTGACGGCTTATCCACGACCGCGTACGAATTACATTT
TCCACGTACAGAGGCTTGTCGTATACACGCTTTGTAGTGTTGTTTCTTAGGTAGGCAGGT
TCAGGTGTTGGCTGCTGATGCTGGTCCCTGTCGGGCCAGCCTGGCATTCTTAAAAACTGA
CTGACTAGATAGACGCAGGATAGGGTAGGTCGTTACCATTGATGGAAAGCACTGTGTAGG
ATGGGACAGGACAGGGAGTCACTTACTCCTGAGCCTATTGTAGCTAGCACGCATGCAAGT
GGGGTGAGGGATAGCTTGAGCTTGCGCATTAACCTGCATTGATTCTTCCCGATGATGCCG
GGTTGCTTTCGGTATGTAGTATAGCGGTGACGATGCAAAGAGACCAAAGACGTGGCCTAG
CTGCGATGCTGGTATGCAGAGGGGGCTATGTGTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002747A_C01 KCC002747A_c01
         (1715 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T09110 envelope protein LIP-36G2, low CO2 inducible - Chlam...   706  0.0
pir||T09109 envelope protein LIP-36G1, low CO2 inducible - Chlam...   686  0.0
ref|NP_593701.1| putative mitochondrial carrier protein [Schizos...   180  6e-44
ref|XP_331045.1| hypothetical protein [Neurospora crassa] gi|289...   178  2e-43
gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine trans...   176  9e-43

>pir||T09110 envelope protein LIP-36G2, low CO2 inducible - Chlamydomonas
            reinhardtii gi|2459575|gb|AAB71744.1| envelope protein
            [Chlamydomonas reinhardtii]
          Length = 355

 Score =  706 bits (1822), Expect = 0.0
 Identities = 355/355 (100%), Positives = 355/355 (100%)
 Frame = +2

Query: 149  MASDAMTINEALMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA 328
            MASDAMTINEALMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA
Sbjct: 1    MASDAMTINEALMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA 60

Query: 329  LAAKLPPSEVYKDSMDCVRKMIKSEGPLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLE 508
            LAAKLPPSEVYKDSMDCVRKMIKSEGPLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLE
Sbjct: 61   LAAKLPPSEVYKDSMDCVRKMIKSEGPLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLE 120

Query: 509  GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA 688
            GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA
Sbjct: 121  GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA 180

Query: 689  EEFYKGSLDCFKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGV 868
            EEFYKGSLDCFKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGV
Sbjct: 181  EEFYKGSLDCFKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGV 240

Query: 869  HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKPQYSTTIDCVKQVIASE 1048
            HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKPQYSTTIDCVKQVIASE
Sbjct: 241  HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKPQYSTTIDCVKQVIASE 300

Query: 1049 GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPATAQ 1213
            GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPATAQ
Sbjct: 301  GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPATAQ 355

>pir||T09109 envelope protein LIP-36G1, low CO2 inducible - Chlamydomonas
            reinhardtii gi|2459573|gb|AAB71743.1| envelope protein
            [Chlamydomonas reinhardtii]
          Length = 358

 Score =  686 bits (1771), Expect = 0.0
 Identities = 339/353 (96%), Positives = 351/353 (99%)
 Frame = +2

Query: 149  MASDAMTINEALMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA 328
            M+SDAMTINE+LMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA
Sbjct: 1    MSSDAMTINESLMEVEHTPAVHKRILDILPGISGGVARVMIGQPFDTIKVRLQVLGQGTA 60

Query: 329  LAAKLPPSEVYKDSMDCVRKMIKSEGPLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLE 508
            LAAKLPPSEVYKDSMDC+RKM+KSEGPLSFYKGTVAPLVGNMVLLGIHFPVFS+VRK LE
Sbjct: 61   LAAKLPPSEVYKDSMDCIRKMVKSEGPLSFYKGTVAPLVGNMVLLGIHFPVFSAVRKQLE 120

Query: 509  GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA 688
            GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA
Sbjct: 121  GDDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGA 180

Query: 689  EEFYKGSLDCFKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGV 868
            EEFYKGSLDCFKQVMSKHGIKGLYRGF+STILRDMQGYAWFFLGYEATVNHFLQNAGPGV
Sbjct: 181  EEFYKGSLDCFKQVMSKHGIKGLYRGFTSTILRDMQGYAWFFLGYEATVNHFLQNAGPGV 240

Query: 869  HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKPQYSTTIDCVKQVIASE 1048
            HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSK+QADSF KPQYS+T+DC+K+V+ASE
Sbjct: 241  HTKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKLQADSFAKPQYSSTMDCLKKVLASE 300

Query: 1049 GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPAT 1207
            GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPAT
Sbjct: 301  GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQGIKWYEENVEHIYGGVIGPAT 353

>ref|NP_593701.1| putative mitochondrial carrier protein [Schizosaccharomyces pombe]
            gi|1723434|sp|Q10248|YD1K_SCHPO Putative mitochondrial
            carrier C4G9.20c gi|7522499|pir||T38879 probable
            mitochondrial carrier protein - fission yeast
            (Schizosaccharomyces pombe) gi|1204220|emb|CAA93570.1|
            SPAC4G9.20c [Schizosaccharomyces pombe]
          Length = 302

 Score =  180 bits (457), Expect = 6e-44
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 1/310 (0%)
 Frame = +2

Query: 227  DILPGISGGVARVMIGQPFDTIKVRLQVLGQGTALAAKLPPSEVYKDSMDCVRKMIKSEG 406
            D L G+SGGVA+V++GQPFD +KVRLQ         ++   S +Y +++DCV+K+ K+EG
Sbjct: 20   DFLAGVSGGVAQVLVGQPFDCVKVRLQ---------SQSNVSPIYNNALDCVKKISKNEG 70

Query: 407  PLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLEGDDHYSNFSHANVLLSGAAAGAAGSL 586
              +FYKGTV PL+G    + I F  F   ++    D   +  +     +SGA +G A S 
Sbjct: 71   LAAFYKGTVLPLLGIGFCVSIQFTTFEYCKRFFSRDG--TPVTMPQYYVSGAISGLANSF 128

Query: 587  ISAPVELVRTKMQMQRRAALAGTVAAGAAASAGAEEFYKGSLDCFKQVMSKHGIKGLYRG 766
            +  PVE VR ++Q+Q                 G    Y G  DC K++ S++G+ G+ +G
Sbjct: 129  LVGPVEHVRIRLQIQ----------------TGKNVLYHGPWDCIKKISSQYGLSGIMKG 172

Query: 767  FSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGVHTKADLNYLQVMAAGVVAGFGLWGSM 946
            ++ T  R+  G   +FL YEA V + +  A   +  ++     ++   G  AG+ +W + 
Sbjct: 173  YNPTAAREAHGLGMYFLAYEALVKNTM--AKHHLTDRSQTPGWKLCVFGAGAGYAMWLAA 230

Query: 947  FPIDTIKSKMQADSFV-KPQYSTTIDCVKQVIASEGQAGLWRGFSAAMYRAIPVNAGIFL 1123
            +P D +KSK+Q D F+ K  Y  +  C K +    G  G +RGF   + RA P NA  F 
Sbjct: 231  YPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVTFY 290

Query: 1124 AVEGTRQGIK 1153
              E   Q I+
Sbjct: 291  VYETVSQHIR 300

>ref|XP_331045.1| hypothetical protein [Neurospora crassa] gi|28921370|gb|EAA30677.1|
            hypothetical protein [Neurospora crassa]
          Length = 312

 Score =  178 bits (452), Expect = 2e-43
 Identities = 112/320 (35%), Positives = 159/320 (49%), Gaps = 12/320 (3%)
 Frame = +2

Query: 227  DILPGISGGVARVMIGQPFDTIKVRLQVLGQGTALAAKLPPSEVYKDSMDCVRKMIKSEG 406
            D+  G  GG+A+V+IGQPFD +KVRLQ   Q             Y  ++     + K EG
Sbjct: 23   DLFSGAVGGIAQVLIGQPFDIVKVRLQTSTQ-------------YSSALTAAASIYKHEG 69

Query: 407  PLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLEG-----DDHY----SNFSHANVLLSG 559
             L+FYKGT+ PL+G    + I F  F S R+ LE      D  +    SN  +     +G
Sbjct: 70   ALAFYKGTLTPLLGIGACVSIQFGAFHSARRFLEQRRAATDKSFIPGVSNLGYGEYYAAG 129

Query: 560  AAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGAEEFYKGSLDCFKQVMSK 739
            A AG A S+IS P+E VR ++Q Q                 GA   Y G  DC +++  +
Sbjct: 130  AFAGVANSVISGPIEHVRIRLQAQPH---------------GAGRLYSGPWDCVRKLSQQ 174

Query: 740  HG--IKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGVHTKADLNYLQVMAAG 913
             G  + GLYRG   T+LR+ Q Y  +FL +E  +N    +A      + ++   ++   G
Sbjct: 175  AGGVLPGLYRGEVVTVLREAQAYGLWFLAFEWLMN---ADAARNKIDRKEIPSYKIALYG 231

Query: 914  VVAGFGLWGSMFPIDTIKSKMQADSFVKPQ-YSTTIDCVKQVIASEGQAGLWRGFSAAMY 1090
             +AG  LW   +P+D +KSKMQ D F   Q Y +  DC  Q   +EG  G W+G    + 
Sbjct: 232  GLAGEALWLGSYPLDVVKSKMQTDGFGAGQKYKSMRDCFAQTFRAEGMRGFWKGIGPTLL 291

Query: 1091 RAIPVNAGIFLAVEGTRQGI 1150
            RA+PV+AG F  VE T + I
Sbjct: 292  RAMPVSAGTFAVVEMTMRAI 311

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 61/210 (29%), Positives = 89/210 (42%), Gaps = 3/210 (1%)
 Frame = +2

Query: 512  DDHYSNFSHANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGAE 691
            D   +    A  L SGA  G A  LI  P ++V+ ++Q   + + A T AA      GA 
Sbjct: 12   DGQNAGLQTAKDLFSGAVGGIAQVLIGQPFDIVKVRLQTSTQYSSALTAAASIYKHEGAL 71

Query: 692  EFYKGSLDCFKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGVH 871
             FYKG+L     + +   I+  +  F S      Q  A       AT   F+    PGV 
Sbjct: 72   AFYKGTLTPLLGIGACVSIQ--FGAFHSARRFLEQRRA-------ATDKSFI----PGV- 117

Query: 872  TKADLNYLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKPQ-YSTTIDCVKQVIASE 1048
              ++L Y +  AAG  AG        PI+ ++ ++QA      + YS   DCV+++    
Sbjct: 118  --SNLGYGEYYAAGAFAGVANSVISGPIEHVRIRLQAQPHGAGRLYSGPWDCVRKLSQQA 175

Query: 1049 GQA--GLWRGFSAAMYRAIPVNAGIFLAVE 1132
            G    GL+RG    + R        FLA E
Sbjct: 176  GGVLPGLYRGEVVTVLREAQAYGLWFLAFE 205

>gb|AAK00443.1|AC060755_13 putative carnitine/acylcarnitine translocase [Oryza sativa]
            gi|31433632|gb|AAP55124.1| putative
            carnitine/acylcarnitine translocase [Oryza sativa
            (japonica cultivar-group)]
          Length = 316

 Score =  176 bits (447), Expect = 9e-43
 Identities = 109/320 (34%), Positives = 172/320 (53%), Gaps = 12/320 (3%)
 Frame = +2

Query: 227  DILPGISGGVARVMIGQPFDTIKVRLQVLGQGTALAAKLPPSEVYKDSMDCVRKMIKSEG 406
            D+  G  GG A++++G PFDTIKV+LQ   Q T    + P    +  +MD V++ + +EG
Sbjct: 7    DLTAGTVGGAAQLVVGHPFDTIKVKLQ--SQPTPPPGQPPK---FAGAMDAVKQTLAAEG 61

Query: 407  PLSFYKGTVAPLVGNMVLLGIHFPVFSSVRKMLEGDDHYSNFSHANVLLSGAAAGAAGSL 586
            P   YKG  APL        + F V   +  +L  +   +  + +  +++GA AG A S 
Sbjct: 62   PRGLYKGMGAPLATVAAFNALLFTVRGQMEAVLRSEPG-APLTVSQQVVAGAGAGVAVSF 120

Query: 587  ISAPVELVRTKMQMQRRAALAGTVAAGAAAS-----------AGAEEFYKGSLDCFKQVM 733
            ++ P EL++ ++Q Q   A A   AA AAAS           + A   Y G +D  KQV+
Sbjct: 121  LACPTELIKCRLQAQSALASAAPAAAAAAASPVGGGAATATASVAAVKYGGPVDVAKQVL 180

Query: 734  -SKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQNAGPGVHTKADLNYLQVMAA 910
             S+ G+ GL++G   T+ R++ G A  F  YEA   +       G    + L    ++ A
Sbjct: 181  RSEGGVGGLFKGLGPTLAREVPGNALMFGVYEAIKQYLA-----GGQDTSSLGRGSLVVA 235

Query: 911  GVVAGFGLWGSMFPIDTIKSKMQADSFVKPQYSTTIDCVKQVIASEGQAGLWRGFSAAMY 1090
            G +AG   WGS++P D +KS +Q D +  P+YS ++D  ++++A++G  GL++GF  AM 
Sbjct: 236  GGLAGASFWGSVYPTDVVKSVIQVDDYKNPKYSGSMDAFRKILAADGVKGLYKGFGPAMA 295

Query: 1091 RAIPVNAGIFLAVEGTRQGI 1150
            R++P NA  FLA E TR  +
Sbjct: 296  RSVPANAACFLAYEVTRSAL 315

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 57/233 (24%), Positives = 91/233 (38%), Gaps = 31/233 (13%)
 Frame = +2

Query: 539  ANVLLSGAAAGAAGSLISAPVELVRTKMQMQRRAALAGTVAAGAAASAGAEEFYKGSLDC 718
            A  L +G   GAA  ++  P + ++ K+Q Q                 G    + G++D 
Sbjct: 5    AKDLTAGTVGGAAQLVVGHPFDTIKVKLQSQ------------PTPPPGQPPKFAGAMDA 52

Query: 719  FKQVMSKHGIKGLYRGFSSTILRDMQGYAWFFLGYEATVNHFLQ---NAGPGVHTKADLN 889
             KQ ++  G +GLY+G  + +       A  F     TV   ++    + PG    A L 
Sbjct: 53   VKQTLAAEGPRGLYKGMGAPLATVAAFNALLF-----TVRGQMEAVLRSEPG----APLT 103

Query: 890  YLQVMAAGVVAGFGLWGSMFPIDTIKSKMQADSFVKP----------------------- 1000
              Q + AG  AG  +     P + IK ++QA S +                         
Sbjct: 104  VSQQVVAGAGAGVAVSFLACPTELIKCRLQAQSALASAAPAAAAAAASPVGGGAATATAS 163

Query: 1001 ----QYSTTIDCVKQVIASE-GQAGLWRGFSAAMYRAIPVNAGIFLAVEGTRQ 1144
                +Y   +D  KQV+ SE G  GL++G    + R +P NA +F   E  +Q
Sbjct: 164  VAAVKYGGPVDVAKQVLRSEGGVGGLFKGLGPTLAREVPGNALMFGVYEAIKQ 216



EST assemble image


clone accession position
1 LC003e03_r AV619079 1 294
2 LCL007d05_r AV626345 1 156
3 LCL094e06_r AV631465 16 319
4 MX258g11_r BP092765 20 448
5 LCL022h04_r AV627218 21 416
6 MX242d06_r BP091664 23 507
7 MX223a09_r BP090374 23 411
8 LCL055b09_r AV629247 78 563
9 MX024f08_r BP087080 134 555
10 LCL012f10_r AV626634 346 842
11 LC002g12_r AV619032 752 1314
12 LC033e12_r AV621262 1176 1717




Chlamydomonas reinhardtii
Kazusa DNA Research Institute