KCC002746A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002746A_C01 KCC002746A_c01
CAGTGTTGCGCGCGTTACACGTGGAGTTGAGGAGACAAAACCCTCCACTGAAGCGCGATC
CCGATCACACACATGCGAACCTTTCCGGGCCCTGACAAACACGGGTTCACTGTTACCCGT
GCTGGGACAGTGCCGGTTCGACTCGAAAGCGCCACCCTCCGCTCACCAACAGACCGACGC
GTGAAGCTCACACACCCCTACCGGGGCCAACACACTGTTAACCACTCCTACAACAGAGCT
TAACCGCGACTCCTACTGGGACTCACTTATCCCACCAGAAAGCGCCACCGGTTTTGCGAC
GTGCGAGACAGTGCCCACGCCAATACACGCAACTTATTCTTCTCTCGCTACTAGCACTCA
AGAAGGCAGACGGTCCAAAACCCACGGGAAGCTGATGGACATCCGATGCGCTGCTTAGTT
CTTGTAGCGCATGGCGGCCTTGTCGAAGCCTATCGTGGGGAAGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002746A_C01 KCC002746A_c01
         (467 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL35384.1|AF442558_1 serine hydroxymethyltransferase [Chlamy...    38  0.066
ref|NP_502375.1| predicted CDS, receptor for egg jelly like fami...    37  0.11
ref|NP_596170.1| putative glycoprotein [Schizosaccharomyces pomb...    37  0.15
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    35  0.33
gb|AAN71720.1| putative gag protein [Danio rerio]                      35  0.33

>gb|AAL35384.1|AF442558_1 serine hydroxymethyltransferase [Chlamydomonas reinhardtii]
          Length = 520

 Score = 37.7 bits (86), Expect = 0.066
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -3

Query: 465 RFPTIGFDKAAMRYKN 418
           RFPTIGFDKAAMRYKN
Sbjct: 505 RFPTIGFDKAAMRYKN 520

>ref|NP_502375.1| predicted CDS, receptor for egg jelly like family member (4N205)
           [Caenorhabditis elegans] gi|7496504|pir||T19474
           hypothetical protein C25G4.1 - Caenorhabditis elegans
           gi|3874421|emb|CAA94576.1| Hypothetical protein C25G4.1
           [Caenorhabditis elegans] gi|3875596|emb|CAA94587.1|
           Hypothetical protein C25G4.1 [Caenorhabditis elegans]
          Length = 708

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 29/116 (25%), Positives = 47/116 (40%)
 Frame = +2

Query: 35  TKPSTEARSRSHTCEPFRALTNTGSLLPVLGQCRFDSKAPPSAHQQTDA*SSHTPTGANT 214
           ++P T   S + T E    +T T   +P        S   P+    T+  +S  PT    
Sbjct: 251 SEPPTTVTSTTSTTESTSTVTTT---IPTTTTTTTVSTTVPTTKTTTETETSIKPTETTV 307

Query: 215 LLTTPTTELNRDSYWDSLIPPESATGFATCETVPTPIHATYSSLATSTQEGRRSKT 382
           ++TTP+T     +   + +   S+    T  T  T   AT  S+A ST+     K+
Sbjct: 308 IITTPSTTTVTTTVPTTTVTSTSSETTTTTRTTVTSTPATTPSIAASTKAPTTQKS 363

>ref|NP_596170.1| putative glycoprotein [Schizosaccharomyces pombe]
           gi|12044479|emb|CAC19752.1| SPBP19A11.02c
           [Schizosaccharomyces pombe]
          Length = 244

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 28/108 (25%), Positives = 43/108 (38%)
 Frame = +2

Query: 41  PSTEARSRSHTCEPFRALTNTGSLLPVLGQCRFDSKAPPSAHQQTDA*SSHTPTGANTLL 220
           PST   S + T  P  ++  T ++ P        + APP+ H             + T +
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTH-----------VNSTTTV 121

Query: 221 TTPTTELNRDSYWDSLIPPESATGFATCETVPTPIHATYSSLATSTQE 364
             PTT +N      +++PP   T   T   VP   HA  +S   +T E
Sbjct: 122 VPPTTHVNT----TTVVPP--TTHVNTTTVVPPTTHANTTSFVPTTTE 163

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 33/127 (25%), Positives = 50/127 (38%), Gaps = 5/127 (3%)
 Frame = +2

Query: 17   TRGVEETKPSTEARSRSHTCEPF----RALTNTGSLLPVLGQCRFDSKAPPSAHQQTDA* 184
            T G   T P   + +++ TC P     R+ T T +  P     R  +    S    T   
Sbjct: 923  TSGPTTTTP--RSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPR 980

Query: 185  SSHTPTGANTLLTTPTTELNRDSYWDSLIPPESATGFATC-ETVPTPIHATYSSLATSTQ 361
            S+ TP+ +    TTP +     +   +   P S T  +TC  T  TP   T ++ +  T 
Sbjct: 981  STTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRSTTTTTTSRPTT 1040

Query: 362  EGRRSKT 382
               RS T
Sbjct: 1041 TTPRSTT 1047

>gb|AAN71720.1| putative gag protein [Danio rerio]
          Length = 612

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 26/97 (26%), Positives = 41/97 (41%), Gaps = 3/97 (3%)
 Frame = +3

Query: 117 PCWDSAGSTRKRHPPLTNRPTREAHTPLPGPTHC*PLLQQSLTATPTGTHLSHQKAPPVL 296
           P  D+A S+R RH P     T +     PG         QS  AT   +  S + + P +
Sbjct: 146 PTTDNARSSRSRHAPYPQHSTSQTELSHPG---------QSKKATQKSSTTSKKASRPHI 196

Query: 297 RRARQCPR---QYTQLILLSLLALKKADGPKPTGS*W 398
           + +R  P    Q+T+  L ++  +  A+ P  T   W
Sbjct: 197 QESRTTPAISFQHTETPLANISTISHANQPFTTSLTW 233



EST assemble image


clone accession position
1 LC002g09_r AV619029 1 506
2 MX246b05_r BP091910 41 507
3 LC048h02_r AV622376 49 470




Chlamydomonas reinhardtii
Kazusa DNA Research Institute