Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002741A_C01 KCC002741A_c01
(517 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_006039.1| ubiquitination factor E4B; clone 686 protein; h... 38 0.087
ref|XP_297732.1| hypothetical protein XP_297732 [Homo sapiens] 37 0.11
ref|XP_227389.2| similar to 4632407F12Rik protein [Rattus norveg... 37 0.15
dbj|BAC85667.1| unnamed protein product [Homo sapiens] 37 0.19
ref|XP_295994.1| hypothetical protein XP_295994 [Homo sapiens] 36 0.25
>ref|NP_006039.1| ubiquitination factor E4B; clone 686 protein; homologous to yeast
UFD2 [Homo sapiens] gi|24638295|sp|O95155|UB4B_HUMAN
Ubiquitin conjugation factor E4 B (Ubiquitin-fusion
degradation protein 2) (Homozygously deleted in
neuroblastoma-1) gi|4104976|gb|AAD02233.1|
ubiquitin-fusion degradation protein 2 [Homo sapiens]
Length = 1302
Score = 37.7 bits (86), Expect = 0.087
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Frame = +1
Query: 217 WGLCAAFHPSLSCPFPRAVRL-LASAPVAP------AARGSETHTPL--THTRTHPQLHL 369
W PSL+ P A +L + S P++P A GS+ +P +T THP
Sbjct: 283 WSSVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRYRPYTVTHPWASS 342
Query: 370 AQAV*------PCDVGAPHPLPGCSARTRPMSLAASAFPAAPAASS 489
++ P +P +P S+R RP S PA+P+A+S
Sbjct: 343 GVSILSSSPSPPALASSPQAVPASSSRQRPSSTGPPLPPASPSATS 388
>ref|XP_297732.1| hypothetical protein XP_297732 [Homo sapiens]
Length = 198
Score = 37.4 bits (85), Expect = 0.11
Identities = 45/180 (25%), Positives = 68/180 (37%), Gaps = 34/180 (18%)
Frame = +1
Query: 61 GNHPAHPAAPCHSCRTHLLHLRNIPTTMQLAAPN*LAADSIS-------------LGTPC 201
G+ PA APCH T + PT++ L+A+ + L C
Sbjct: 12 GSRPASRRAPCHCAGT------SAPTSLPSHQRPPLSANQMDSSHFFSSWTFQWRLALRC 65
Query: 202 NAHV-RWGLCAAFHPSLSCP-----------------FPRAVRLLASAPV-APAARGSET 324
+ H + C+ F S P P + AS P APA+ + T
Sbjct: 66 SLHFFKLSPCSWFSAPASTPASTSASTSAQASLPSASLPASASAPASTPFSAPASTSAST 125
Query: 325 H--TPLTHTRTHPQLHLAQAV*PCDVGAPHPLPGCSARTRPMSLAASAFPAAPAASSAAS 498
TP+ + + P A A+ P AP P P + + P S + A + PA +SAA+
Sbjct: 126 SAPTPIPASASAP----ASALLPASASAPAPTPFSAPASTPASASVPASASTPALTSAAA 181
>ref|XP_227389.2| similar to 4632407F12Rik protein [Rattus norvegicus]
Length = 527
Score = 37.0 bits (84), Expect = 0.15
Identities = 26/79 (32%), Positives = 34/79 (42%)
Frame = +1
Query: 244 SLSCPFPRAVRLLASAPVAPAARGSETHTPLTHTRTHPQLHLAQAV*PCDVGAPHPLPGC 423
+L P P L V P+ G + T LTHT TH + + P P PG
Sbjct: 289 NLHFPPPLPTPLDPEETVYPSLSGGNSTTNLTHTMTHLGISGGLGLGP-SYDVPASTPGA 347
Query: 424 SARTRPMSLAASAFPAAPA 480
S R R + L+ + PA PA
Sbjct: 348 SPRHRRVPLSPLSLPAGPA 366
>dbj|BAC85667.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 36.6 bits (83), Expect = 0.19
Identities = 29/86 (33%), Positives = 39/86 (44%)
Frame = +2
Query: 260 SHVRSDFWLPRQLHLPRVVPKHILH*HTRAHTHNYISLRLSNLVT*ALRIRCLAVLPVLA 439
+H + +LP H V+ L HT HTH + +L ++L T L + L L
Sbjct: 83 THTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTHTH-TLSCTSLYTHTLSLHWLTCL---- 137
Query: 440 LCHLPPAHSQLRLPRVPPHQLSNHWL 517
H AH+ L LP H LS HWL
Sbjct: 138 YTH-THAHAVLYLP-THTHMLSLHWL 161
>ref|XP_295994.1| hypothetical protein XP_295994 [Homo sapiens]
Length = 487
Score = 36.2 bits (82), Expect = 0.25
Identities = 36/106 (33%), Positives = 41/106 (37%), Gaps = 6/106 (5%)
Frame = +1
Query: 196 PCNAHVRWGLCAAFHPSLSCPFPRAVRLLASAPVAPAARGSE-THTPLTHTRTHPQLHLA 372
PC AH GL A + SLS P P A R + P A GS P R P + A
Sbjct: 3 PCPAH---GLSAPWGTSLSSPAPNASRASPTPPSRAGAAGSAGIKQPPRFLRPRPGMKAA 59
Query: 373 QAV*PCDVGAPHPLPGCSARTRPMSLAASAFPA-----APAASSAA 495
+A P L RP L A FPA P +SAA
Sbjct: 60 RAA----GQPPRHLVHGPGPVRPAGLVAGPFPALTPNRRPGRTSAA 101
