KCC002738A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002738A_C01 KCC002738A_c01
gttcagccgtcggtgtcacaactatttacggttcagacttccagttaaatatttatcata
cattaagaaaactgagcttaCGGCGGGGCAAAATGCATCTTACGGTCACCAAGGCAGCCA
AGCCCGTGGGTCGTCGTGTTTTCGTTTCGCCAAAAGCTGTCCCCAGCTGTCGCTGCTGCC
ACTGCCCCAATGGCTACCGTATCCTTCCCGGCTGAGTATGGGCTGGTCGCCTGGCGCCGT
CGCGGTCTCCTGGTTCGTTCACCACGGCATGATGGCCGTGGGTGTCATGAACGCACGCAA
GAAGTACGGTGTGTCCTACCCCGACCTGTACGCCACTGCGGAGAACTGCCCCAACGCCGA
GTACCGCAAGGCCTTCAACTGCGTTCAGCGCGGGCACCAGAACTCGCTGGAGAACCAGCC
CATCTTCCTGGCGCTGCTACTGGCGGCCGGTGCCAAGCACCCCGTCACCGCCGCCGCCGC
GGGCCTGATCTACTCCCTGGGCAAGGTGTTTTACTTCCGTGGCTACTCCACCGGCGACCC
CAACAAGCGCATGCAGGGCGGTCTGTCCTACCTGnGCCTGTTCACCCTGGTGGGCATCTG
CGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002738A_C01 KCC002738A_c01
         (604 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK38509.1|AC087181_25 putative glutathione S-transferase [Or...   107  1e-22
ref|NP_176758.1| microsomal glutathione s-transferase, putative ...   101  7e-21
gb|AAF23833.1|AC007234_5 F1E22.17 [Arabidopsis thaliana]              101  9e-21
ref|XP_213943.1| similar to microsomal glutathione S-transferase...    99  4e-20
dbj|BAB25726.1| unnamed protein product [Mus musculus]                 99  5e-20

>gb|AAK38509.1|AC087181_25 putative glutathione S-transferase [Oryza sativa]
          Length = 148

 Score =  107 bits (267), Expect = 1e-22
 Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
 Frame = +2

Query: 272 MAVGVMNARKKYGVSYPDLYATAENCPNAEYRKAFNCVQRGHQNSLENQPIFLALLLAAG 451
           M+  V  AR+KY V YP +YA      +A   K FNCVQRGHQNSLE  P+F   LL  G
Sbjct: 28  MSFQVGKARRKYKVFYPTMYAVESENKDA---KLFNCVQRGHQNSLEMMPLFFVTLLVGG 84

Query: 452 AKHPVTAAAAGLIYSLGKVFYFRGYSTGDPNKRMQ-GGLSYLXLFTLVGIC 601
            +HP+ AA  G+ Y++ + FYF+GY+TG P+ R++ GGL++L +F L+ IC
Sbjct: 85  LQHPLVAAGLGVFYAVARFFYFKGYATGIPDNRLKIGGLNFLAIFGLI-IC 134

>ref|NP_176758.1| microsomal glutathione s-transferase, putative [Arabidopsis
           thaliana] gi|14517464|gb|AAK62622.1| At1g65820/F1E22_4
           [Arabidopsis thaliana] gi|17978909|gb|AAL47424.1|
           At1g65820/F1E22_4 [Arabidopsis thaliana]
           gi|21617891|gb|AAM66941.1| glutathione-s-transferase,
           putative [Arabidopsis thaliana]
           gi|25991925|gb|AAN76990.1|AF461148_1 MAPEG-like protein
           [Arabidopsis thaliana]
          Length = 146

 Score =  101 bits (252), Expect = 7e-21
 Identities = 53/111 (47%), Positives = 68/111 (60%), Gaps = 1/111 (0%)
 Frame = +2

Query: 272 MAVGVMNARKKYGVSYPDLYATAENCPNAEYRKAFNCVQRGHQNSLENQPIFLALLLAAG 451
           M   V  ARK+Y V YP LYA      +A   K FNCVQRGHQNSLE  P++  L++  G
Sbjct: 29  MGAQVGRARKRYNVPYPTLYAIESENKDA---KLFNCVQRGHQNSLEMMPMYFILMILGG 85

Query: 452 AKHPVTAAAAGLIYSLGKVFYFRGYSTGDPNKRMQ-GGLSYLXLFTLVGIC 601
            KHP      GL+Y++ + FYF+GY+TGDP KR+  G   +L L  L+ IC
Sbjct: 86  MKHPCICTGLGLLYNVSRFFYFKGYATGDPMKRLTIGKYGFLGLLGLM-IC 135

>gb|AAF23833.1|AC007234_5 F1E22.17 [Arabidopsis thaliana]
          Length = 146

 Score =  101 bits (251), Expect = 9e-21
 Identities = 49/104 (47%), Positives = 63/104 (60%)
 Frame = +2

Query: 272 MAVGVMNARKKYGVSYPDLYATAENCPNAEYRKAFNCVQRGHQNSLENQPIFLALLLAAG 451
           M   V  ARK+Y V YP LYA      +A   K FNCVQRGHQNSLE  P++  L++  G
Sbjct: 29  MGAQVGRARKRYNVPYPTLYAIESENKDA---KLFNCVQRGHQNSLEMMPMYFILMILGG 85

Query: 452 AKHPVTAAAAGLIYSLGKVFYFRGYSTGDPNKRMQGGLSYLXLF 583
            KHP      GL+Y++ + FYF+GY+TGDP KR+  G   L  +
Sbjct: 86  MKHPCICTGLGLLYNVSRFFYFKGYATGDPMKRLTIGFVLLSSY 129

>ref|XP_213943.1| similar to microsomal glutathione S-transferase 3 [Rattus
           norvegicus]
          Length = 152

 Score = 99.4 bits (246), Expect = 4e-20
 Identities = 54/124 (43%), Positives = 72/124 (57%)
 Frame = +2

Query: 233 GAVAVSWFVHHGMMAVGVMNARKKYGVSYPDLYATAENCPNAEYRKAFNCVQRGHQNSLE 412
           GA +    +H   +A+ V  ARKKY V YP +Y+T     + E    FNC+QR HQN+LE
Sbjct: 15  GAASFVMVLH---LAINVGKARKKYKVEYPVMYST-----DPENGHMFNCIQRAHQNTLE 66

Query: 413 NQPIFLALLLAAGAKHPVTAAAAGLIYSLGKVFYFRGYSTGDPNKRMQGGLSYLXLFTLV 592
             P FL  L   G  HP  A+  G+ + +G+V Y  GY TGDP+KR +G +S L LF L+
Sbjct: 67  VYPPFLFFLTVGGVYHPRIASGLGVAWIIGRVLYAYGYYTGDPSKRYRGAVSSLALFALM 126

Query: 593 GICV 604
           G  V
Sbjct: 127 GTTV 130

>dbj|BAB25726.1| unnamed protein product [Mus musculus]
          Length = 153

 Score = 99.0 bits (245), Expect = 5e-20
 Identities = 54/124 (43%), Positives = 71/124 (56%)
 Frame = +2

Query: 233 GAVAVSWFVHHGMMAVGVMNARKKYGVSYPDLYATAENCPNAEYRKAFNCVQRGHQNSLE 412
           GA +    +H   +A+ V  ARKKY V YP +Y+T     + E    FNC+QR HQN+LE
Sbjct: 15  GAASFVMVLH---LAINVGKARKKYKVEYPVMYST-----DPENGHMFNCIQRAHQNTLE 66

Query: 413 NQPIFLALLLAAGAKHPVTAAAAGLIYSLGKVFYFRGYSTGDPNKRMQGGLSYLXLFTLV 592
             P FL  L   G  HP  A+  GL + +G+V Y  GY TGDP+KR +G +  L LF L+
Sbjct: 67  VYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRYRGAVGSLALFALM 126

Query: 593 GICV 604
           G  V
Sbjct: 127 GTTV 130



EST assemble image


clone accession position
1 LC001e04_r AV618929 1 608
2 MX233a08_r BP091049 3 242
3 MX066c07_r BP088675 89 485
4 MXL078c10_r BP097601 112 527
5 MX214b09_r BP089807 115 528
6 MX036c02_r BP087516 119 485
7 MX234g05_r BP091163 124 546




Chlamydomonas reinhardtii
Kazusa DNA Research Institute