KCC002735A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002735A_C01 KCC002735A_c01
gtcacagctgggggaagctccggcggcctcccggtgccttcgtcttcgggccgttcagat
gtcagcggcaacggcagcggGAGAAAGGGCGGCCAGCGGGGCTCTAACAGCGCTGACGGC
AGCCCCTCGGCGGAGGGGAATGGGCCGCCATCGCTGGAGCGGCTGCCTGTGGCGATAAAG
AAGGGCGAGCAGCTGCTGCCATACGTGTGGGACGGCAAACGCATCAGCGCCATGGACGAG
GCGGCCATTGCGGAGGAGGACGTCAACAAGGGGCGGCTTCGCAACTGGGTGCTGGGCCTG
CAGCGGCGGCTGCACGAGGCCTTCCTGCCCGACCCGCGTGACGTCACACCGGACTACTGG
GACTGGCTGCGCTGGCGGCTCAGCCAGCGCTTCTTCAGCTCCACAATGCAGAACTTCTCG
TTCTCGGCGCTGCTCATGGCCACGGGGCTGGGGGCCAAGAAGGCCTTCGCGGCCTCCGCC
GCCATCAACTGGCTGCTCAAGGACGGCGTCAGTCGCATCGTGCGCATGAGTGTGTCCACC
AGCTTCGGACAGACCTTCGACGCAGACCTGAAGCGCATGCGCTTCATCACCTCGCTCATC
TTCACGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002735A_C01 KCC002735A_c01
         (608 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179928.1| expressed protein [Arabidopsis thaliana] gi|748...    64  1e-09
ref|NP_568713.1| expressed protein [Arabidopsis thaliana] gi|166...    64  2e-09
dbj|BAA98149.1| contains similarity to unknown protein~gb|AAD206...    64  2e-09
gb|AAP40410.1| unknown protein [Arabidopsis thaliana] gi|3079409...    59  5e-08
ref|NP_190175.1| expressed protein [Arabidopsis thaliana] gi|112...    59  5e-08

>ref|NP_179928.1| expressed protein [Arabidopsis thaliana] gi|7486160|pir||T01136
           hypothetical protein At2g23470 [imported] - Arabidopsis
           thaliana gi|3242710|gb|AAC23762.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
 Frame = +1

Query: 160 RLPVAIKKGEQLLPYVWDGKRISAMDEAAIAEEDVNKGRLRNWVLGLQR------RLHEA 321
           RLP+ IKK  ++  Y   G  +  +    + EE+ +     ++ LGL        RL  +
Sbjct: 64  RLPIIIKKSGKVSRYFIKGDSLELL---CVDEEEDDS---TSFCLGLDDGFWKLIRLTSS 117

Query: 322 FLPD---PRDVTPDYWDWLRWRLSQRFFSSTMQNFSFSALLMATGLGAKKAFAASAAINW 492
              D   P+ V+ +Y  +++W+   R FSS +Q  +  A+  A G+G  ++ A+SAA NW
Sbjct: 118 AAKDFFLPKQVSDNYISYVKWKFLHRVFSSALQVLATQAMFRAIGIGQSRSLASSAAFNW 177

Query: 493 LLKDGVSRI 519
           +LKDG+ R+
Sbjct: 178 ILKDGLGRL 186

>ref|NP_568713.1| expressed protein [Arabidopsis thaliana] gi|16604643|gb|AAL24114.1|
           unknown protein [Arabidopsis thaliana]
           gi|23296703|gb|AAN13151.1| unknown protein [Arabidopsis
           thaliana]
          Length = 497

 Score = 63.9 bits (154), Expect = 2e-09
 Identities = 32/89 (35%), Positives = 48/89 (52%)
 Frame = +1

Query: 334 PRDVTPDYWDWLRWRLSQRFFSSTMQNFSFSALLMATGLGAKKAFAASAAINWLLKDGVS 513
           P  V   Y  ++ WR  + FF   M  F+   LL + G     + +A+ AINW+LKDG  
Sbjct: 118 PGSVNESYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGASRNSSASAAVAINWILKDGAG 177

Query: 514 RIVRMSVSTSFGQTFDADLKRMRFITSLI 600
           R+ +M  +   G+ FD DLK++RF   L+
Sbjct: 178 RVGKMLFARQ-GKKFDYDLKQLRFAGDLL 205

>dbj|BAA98149.1| contains similarity to unknown
           protein~gb|AAD20664.1~gene_id:K21G20.3 [Arabidopsis
           thaliana]
          Length = 407

 Score = 63.9 bits (154), Expect = 2e-09
 Identities = 32/89 (35%), Positives = 48/89 (52%)
 Frame = +1

Query: 334 PRDVTPDYWDWLRWRLSQRFFSSTMQNFSFSALLMATGLGAKKAFAASAAINWLLKDGVS 513
           P  V   Y  ++ WR  + FF   M  F+   LL + G     + +A+ AINW+LKDG  
Sbjct: 28  PGSVNESYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGASRNSSASAAVAINWILKDGAG 87

Query: 514 RIVRMSVSTSFGQTFDADLKRMRFITSLI 600
           R+ +M  +   G+ FD DLK++RF   L+
Sbjct: 88  RVGKMLFARQ-GKKFDYDLKQLRFAGDLL 115

>gb|AAP40410.1| unknown protein [Arabidopsis thaliana] gi|30794095|gb|AAP40490.1|
           unknown protein [Arabidopsis thaliana]
          Length = 608

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 57/215 (26%), Positives = 91/215 (41%), Gaps = 29/215 (13%)
 Frame = +1

Query: 43  SSGRSDVSGNGSGRKGGQRGSNSADGSPSAEG----------------NGPPSLERLPVA 174
           S+G +D +GNG G  G   G NS D S                     +   ++ +   +
Sbjct: 79  SNGNND-NGNGGGGGGDGGGDNSDDSSFDLRYLCFLLLGLSCFFHFRLSAASAIAKDQNS 137

Query: 175 IKKGEQLLPYVWD--GKRISAMDEAAIAEEDVNKGRL---------RNWVLGLQRRLHEA 321
              G+ +   VW+  G +   +    + +E V++             N +   +  L + 
Sbjct: 138 DSNGDAVKETVWEVRGSKRKRLVPDFVKDEFVSEESAFELSSSLTPENLLAQCRNLLTQF 197

Query: 322 FLPD--PRDVTPDYWDWLRWRLSQRFFSSTMQNFSFSALLMATGLGAKKAFAASAAINWL 495
            LP+  P  VT DY D+  WR  Q   S      +  +LL A GLG K A   +AAINW+
Sbjct: 198 LLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLG-KGAIPTAAAINWV 256

Query: 496 LKDGVSRIVRMSVSTSFGQTFDADLKRMRFITSLI 600
           LKDG+  + ++ +S  +G+ FD   K  R    L+
Sbjct: 257 LKDGIGYLSKIMLS-KYGRHFDVHPKGWRLFADLL 290

>ref|NP_190175.1| expressed protein [Arabidopsis thaliana] gi|11290096|pir||T47529
           hypothetical protein F16L2.100 - Arabidopsis thaliana
           gi|7339490|emb|CAB82813.1| putative protein [Arabidopsis
           thaliana]
          Length = 631

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 57/215 (26%), Positives = 91/215 (41%), Gaps = 29/215 (13%)
 Frame = +1

Query: 43  SSGRSDVSGNGSGRKGGQRGSNSADGSPSAEG----------------NGPPSLERLPVA 174
           S+G +D +GNG G  G   G NS D S                     +   ++ +   +
Sbjct: 79  SNGNND-NGNGGGGGGDGGGDNSDDSSFDLRYLCFLLLGLSCFFHFRLSAASAIAKDQNS 137

Query: 175 IKKGEQLLPYVWD--GKRISAMDEAAIAEEDVNKGRL---------RNWVLGLQRRLHEA 321
              G+ +   VW+  G +   +    + +E V++             N +   +  L + 
Sbjct: 138 DSNGDAVKETVWEVRGSKRKRLVPDFVKDEFVSEESAFELSSSLTPENLLAQCRNLLTQF 197

Query: 322 FLPD--PRDVTPDYWDWLRWRLSQRFFSSTMQNFSFSALLMATGLGAKKAFAASAAINWL 495
            LP+  P  VT DY D+  WR  Q   S      +  +LL A GLG K A   +AAINW+
Sbjct: 198 LLPEGFPNSVTSDYLDYSLWRGVQGIASQISGVLATQSLLYAVGLG-KGAIPTAAAINWV 256

Query: 496 LKDGVSRIVRMSVSTSFGQTFDADLKRMRFITSLI 600
           LKDG+  + ++ +S  +G+ FD   K  R    L+
Sbjct: 257 LKDGIGYLSKIMLS-KYGRHFDVHPKGWRLFADLL 290



EST assemble image


clone accession position
1 MXL080d05_r BP097731 1 370
2 HCL100g07_r AV645298 156 608




Chlamydomonas reinhardtii
Kazusa DNA Research Institute