Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002730A_C01 KCC002730A_c01
(518 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00057173.1| COG2812: DNA polymerase III, gamma/tau subuni... 41 0.008
gb|AAA42148.1| synapsin Ib 41 0.011
ref|NP_062006.1| synapsin 1; Synapsin I [Rattus norvegicus] gi|6... 41 0.011
ref|XP_167889.2| hypothetical protein XP_167889 [Homo sapiens] 41 0.011
ref|ZP_00056716.1| hypothetical protein [Thermobifida fusca] 41 0.011
>ref|ZP_00057173.1| COG2812: DNA polymerase III, gamma/tau subunits [Thermobifida
fusca]
Length = 692
Score = 41.2 bits (95), Expect = 0.008
Identities = 29/91 (31%), Positives = 37/91 (39%), Gaps = 12/91 (13%)
Frame = -1
Query: 500 PATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGPSTQPQ---------GAAR 348
P A +PP PA +P P+ P PP P PS +P GA R
Sbjct: 398 PPAAGTPATAPPSTPAAAPRPSTAEPRPPQP--------PAPSARPHPAPAAADDWGAPR 449
Query: 347 WPQSPRPAA-EPTAPQSAAAAAL--LLPHLL 264
P P PAA +P AP A + PH++
Sbjct: 450 RPSQPAPAAPQPAAPGPAGEGSFDDRWPHIV 480
>gb|AAA42148.1| synapsin Ib
Length = 668
Score = 40.8 bits (94), Expect = 0.011
Identities = 30/86 (34%), Positives = 37/86 (42%), Gaps = 1/86 (1%)
Frame = -1
Query: 500 PATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGPSTQPQGAAR-WPQSPRPA 324
PA +G SP G+ + P PGP R GPGP T P + P P PA
Sbjct: 570 PAPPKVSGASPGGQQRQGPPQKP--PGPAGPIRQASQAGPGPRTGPPTTQQPRPSGPGPA 627
Query: 323 AEPTAPQSAAAAALLLPHLLNAALIG 246
PT PQ A + +P + AA G
Sbjct: 628 GRPTKPQLAQKPSQDVPPPIIAAAGG 653
Score = 33.9 bits (76), Expect = 1.3
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = -1
Query: 506 ARPATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGP----STQPQGAARW-- 345
+RP A G P RP SP P + GPP A R GP P P G R
Sbjct: 531 SRPV-AGGPGAPPAARPPASPSPQR-QAGPPQATRQASISGPAPPKVSGASPGGQQRQGP 588
Query: 344 PQSPRPAAEPTAPQSAA 294
PQ P A P S A
Sbjct: 589 PQKPPGPAGPIRQASQA 605
>ref|NP_062006.1| synapsin 1; Synapsin I [Rattus norvegicus]
gi|6686305|sp|P09951|SYN1_RAT Synapsin I
gi|112347|pir||A30411 synapsin Ia - rat
gi|206921|gb|AAA42145.1| synapsin Ia
Length = 704
Score = 40.8 bits (94), Expect = 0.011
Identities = 30/86 (34%), Positives = 37/86 (42%), Gaps = 1/86 (1%)
Frame = -1
Query: 500 PATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGPSTQPQGAAR-WPQSPRPA 324
PA +G SP G+ + P PGP R GPGP T P + P P PA
Sbjct: 570 PAPPKVSGASPGGQQRQGPPQKP--PGPAGPIRQASQAGPGPRTGPPTTQQPRPSGPGPA 627
Query: 323 AEPTAPQSAAAAALLLPHLLNAALIG 246
PT PQ A + +P + AA G
Sbjct: 628 GRPTKPQLAQKPSQDVPPPIIAAAGG 653
Score = 33.9 bits (76), Expect = 1.3
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = -1
Query: 506 ARPATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGP----STQPQGAARW-- 345
+RP A G P RP SP P + GPP A R GP P P G R
Sbjct: 531 SRPV-AGGPGAPPAARPPASPSPQR-QAGPPQATRQASISGPAPPKVSGASPGGQQRQGP 588
Query: 344 PQSPRPAAEPTAPQSAA 294
PQ P A P S A
Sbjct: 589 PQKPPGPAGPIRQASQA 605
>ref|XP_167889.2| hypothetical protein XP_167889 [Homo sapiens]
Length = 202
Score = 40.8 bits (94), Expect = 0.011
Identities = 30/72 (41%), Positives = 34/72 (46%)
Frame = -1
Query: 506 ARPATAARAGRSPPGRPARSPHPAH*RPGPPSA*RHCCCWGPGPSTQPQGAARWPQSPRP 327
+R A A A R PP RP RSP P RPG P +P+GAA P +P P
Sbjct: 79 SRLARACYARRLPP-RPTRSPAPLARRPGK-------------PPRRPKGAAGHPSAP-P 123
Query: 326 AAEPTAPQSAAA 291
AA P AP A
Sbjct: 124 AAAPAAPAQPPA 135
>ref|ZP_00056716.1| hypothetical protein [Thermobifida fusca]
Length = 546
Score = 40.8 bits (94), Expect = 0.011
Identities = 22/36 (61%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 518 SRACARPATAARAGRSP-PGRPARSPHPAH*RPGPP 414
SRA P A AGR P PG PAR P PA RPGPP
Sbjct: 6 SRAGTAPLLPAPAGRRPHPGSPARPPSPAGRRPGPP 41
