KCC002729A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002729A_C01 KCC002729A_c01
taacgaggctttgctataacatgcaaaccattgcaagcaccacacagctgcaaatgacaa
gtcgttatcagtgacaaactAATAGGCCTGAAACAGTTGCGAACTGACTACAAACGCACA
TCTGTAGGTATAATGTGTGGGAGAGCAAAGTGGAGGGCTTGCAGCCCAGCCTTTGCGCTG
GTGCTGCTGCTTTTAGCAGTCAGGACGGAGCTGGCGCGATGCCACGGACAGTACAGCTCG
CTGGGCGACCTGCTGCACTGGTATAAGCACGCGTCAACGACACATTCGAACCTGATGAGC
TTCACGGAGATGAAGGAGCCCGGGCATGAGCACGTGATGATGCCAGTGATCACCATCACC
AACCCCAGCAGCGGCTTGCCGCCGGCTGAGAAGTCGCTGGCTGTGCTGGTGTTCGGGGAG
CACGCGCGTGAGCTAATCACGTGCGAAGTAGGGCTGTGGATGTCGCGGGTGCTCGTTGGC
GACACAGCGGAGATCTTTAGCTGGGCCGAGTGGGCGACGGCCTTTGAGCCGCTGGGCATC
GCCAAGGCAGATGTGGAGAAAACGGTGAAGGACTGGGTAAAGAATATAACAGACAACCTC
GTCTTGAAGGTGATTCCGGTGGAGAACGTGGATGGGCGGCAGGCGTGGGAGGCGGGCAAC
CTGTGCCTGCGCAAGACGGCGCACGGCGTGGACCTGAACCGCAACTACCCCTTCGGCTTC
GCCAGCGAGCCCGCGCACTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002729A_C01 KCC002729A_c01
         (740 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199047.1| hypothetical protein [Arabidopsis thaliana]           62  9e-09
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    51  2e-05
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    50  5e-05
ref|NP_189098.1| protein kinase -related [Arabidopsis thaliana] ...    48  1e-04
ref|NP_189083.1| protein kinase -related [Arabidopsis thaliana]        48  2e-04

>ref|NP_199047.1| hypothetical protein [Arabidopsis thaliana]
          Length = 461

 Score = 62.0 bits (149), Expect = 9e-09
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
 Frame = +1

Query: 247 DLLHWYKHASTTHSNLMSFTEMKEPGHEHVMMPVITITNPSSGLPPAEKS--LAVLVFGE 420
           DL+         H + +S  E+ + G++     V  +T    G    ++S    +L FG+
Sbjct: 81  DLMEQIHSLVHRHPDKLSI-ELIKSGNKGYNAEVNVVTYCRGGKESDDRSNFRILLTFGQ 139

Query: 421 HARELITCEVGLWMSRVLVGDTAEIFSWAEWATAFEPLGIAKADVEKTVKDW--VKNITD 594
           H RELIT E+                       AF  L I   +     K+   +KN  D
Sbjct: 140 HGRELITSEL-----------------------AFRILSILSEEQFLPNKNGGILKNTLD 176

Query: 595 NLVLKVIPVENVDGRQAWEAGNLCLRKTAHGVDLNRNY 708
            LV+K++P+EN +GR+  E+G+LC R+   GVDLNRN+
Sbjct: 177 KLVIKMVPIENPNGRKRVESGDLCERRNGRGVDLNRNW 214

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 61/199 (30%), Positives = 83/199 (41%), Gaps = 11/199 (5%)
 Frame = -2

Query: 718 SRRGSCGSGPRRAPSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLPSPSPF-SPHLPW 542
           +RR  C SG   A +     CP    A  PRSPP          +  P+ +P    H P 
Sbjct: 66  ARRRGCFSGDFSASAAPARCCPSSCCARRPRSPP--------FCFPPPAAAPARRAHRPP 117

Query: 541 RC---PAAQRP-----SPTRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQ 386
           RC   PAA  P      P R S RS     R+P + TA  R+     R P T A   T +
Sbjct: 118 RCRCAPAAPSPPARAFGPWRSSTRS---SARSPQSPTAGWRSFAPTPRRPCTAADSGTRR 174

Query: 385 PAAS--RCWGW*W*SLASSRAHARAPSSP*SSSGSNVSLTRAYTSAAGRPASCTVRGIAP 212
            AAS  RC G    + + +R  A AP +   +S  +  ++     +A RP+S +    A 
Sbjct: 175 TAASGTRCRG----TPSGTRCSAPAPCAASPASARSPPVSPRTARSASRPSSRS----AS 226

Query: 211 APS*LLKAAAPAQRLGCKP 155
           APS      A  +   C+P
Sbjct: 227 APS-----RASPRTCSCRP 240

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 49.7 bits (117), Expect = 5e-05
 Identities = 51/178 (28%), Positives = 62/178 (34%), Gaps = 3/178 (1%)
 Frame = -2

Query: 679 PSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLP---SPSPFSPHLPWRCPAAQRPSPT 509
           P  A    PPP PAA P  PP  P        S P   +P   +P  P   P A RP+PT
Sbjct: 90  PRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPT 149

Query: 508 RPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQPAASRCWGW*W*SLASSRA 329
            P+       Q AP             AR   TP  P  + PAA           A+   
Sbjct: 150 PPAPPPAAAPQHAPPPPPP------PAARPTPTPPPPPPAGPAARPTPA----PTATPTP 199

Query: 328 HARAPSSP*SSSGSNVSLTRAYTSAAGRPASCTVRGIAPAPS*LLKAAAPAQRLGCKP 155
            A  P++P +  GS         +    P +       PAP      A PA R G  P
Sbjct: 200 VAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPG-STPGAPPAGRPGAPP 256

 Score = 41.6 bits (96), Expect = 0.013
 Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 7/183 (3%)
 Frame = -2

Query: 691 PRRAPSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLPSPSPFSPHLPWRCPAAQRPSP 512
           P  AP  A      P PAA P  PP +P        +   P P +P  P   PAA RP+P
Sbjct: 56  PGAAPPAAPARPAAPPPAAAPPHPPAAPPP------AAAPPRPAAPPPPPPPPAA-RPAP 108

Query: 511 TRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTP----AQPATSQPAASRCWGW*W*SL 344
             P       +Q +P  + A  +    HA  P  P    A+PA + PA            
Sbjct: 109 PPPPPPPAAPKQPSPPPAAAPQQ----HAPTPPPPAPPAARPAPTPPAPPP--------- 155

Query: 343 ASSRAHARAPSSP*SSSGSNVSLTRAYTSAAGRPA---SCTVRGIAPAPS*LLKAAAPAQ 173
           A++  HA  P  P ++  +           A RP    + T   +AP P      AAP  
Sbjct: 156 AAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPP------AAPTA 209

Query: 172 RLG 164
           R G
Sbjct: 210 RPG 212

 Score = 33.9 bits (76), Expect = 2.7
 Identities = 29/106 (27%), Positives = 38/106 (35%)
 Frame = -2

Query: 691 PRRAPSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLPSPSPFSPHLPWRCPAAQRPSP 512
           P  AP  A    PPP     P  PP  P+       + P+P+P              P+P
Sbjct: 155 PAAAPQHAPPPPPPPAARPTPTPPPPPPAGPA----ARPTPAP-----------TATPTP 199

Query: 511 TRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQPAAS 374
             P   +P  R  +PA +     T         TPA  AT  P A+
Sbjct: 200 VAPPPAAPTARPGSPAPAATPAPT--------PTPAPTATPAPTAT 237

>ref|NP_189098.1| protein kinase -related [Arabidopsis thaliana]
           gi|9294050|dbj|BAB02007.1| protein kinase-like protein
           [Arabidopsis thaliana] gi|15983765|gb|AAL10479.1|
           AT3g24550/MOB24_8 [Arabidopsis thaliana]
           gi|16649063|gb|AAL24383.1| protein kinase-like protein
           [Arabidopsis thaliana] gi|20260332|gb|AAM13064.1|
           unknown protein [Arabidopsis thaliana]
           gi|22136228|gb|AAM91192.1| protein kinase-like protein
           [Arabidopsis thaliana] gi|30725474|gb|AAP37759.1|
           At3g24550 [Arabidopsis thaliana]
          Length = 652

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 39/109 (35%), Positives = 47/109 (42%), Gaps = 1/109 (0%)
 Frame = -2

Query: 697 SGPRRAPSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLPSPSPFSPHLPWRCPAAQRP 518
           S P  +PS   T  PPP+    P  PP SP   G L   LP PSP +P  P        P
Sbjct: 41  SSPPPSPSTNSTS-PPPSSPLPPSLPPPSPP--GSLTPPLPQPSPSAPITP------SPP 91

Query: 517 SPTRPS-*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQPAAS 374
           SPT PS  RSP    + P  + +           PRTP+    S P+ S
Sbjct: 92  SPTTPSNPRSPPSPNQGPPNTPS--------GSTPRTPSNTKPSPPSDS 132

>ref|NP_189083.1| protein kinase -related [Arabidopsis thaliana]
          Length = 694

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 46/152 (30%), Positives = 57/152 (37%), Gaps = 1/152 (0%)
 Frame = -2

Query: 691 PRRAPSCAGTGCPPPTPAAHPRSPPESPSRRGCLLYSLP-SPSPFSPHLPWRCPAAQRPS 515
           P   P    T  PP TP+    SPP +PS    +  S P +PSP  P      P    P 
Sbjct: 80  PSPLPPSPTTPSPPLTPSPTTPSPPLTPSPPPAITPSPPLTPSPLPP-----SPTTPSPP 134

Query: 514 PTRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQPAASRCWGW*W*SLASS 335
           P  PS  SP      P +S   LR       +P TP+ P  S P  S             
Sbjct: 135 PPSPSIPSPPLTPSPPPSSP--LRPSSPPPPSPATPSTPPRSPPPPST-------PTPPP 185

Query: 334 RAHARAPSSP*SSSGSNVSLTRAYTSAAGRPA 239
           R  + +P  P S SG     T + T  +  PA
Sbjct: 186 RVGSLSPPPPASPSGGRSPSTPSTTPGSSPPA 217

 Score = 41.2 bits (95), Expect = 0.017
 Identities = 32/89 (35%), Positives = 38/89 (41%)
 Frame = -2

Query: 655 PPPTPAAHPRSPPESPSRRGCLLYSLPSPSPFSPHLPWRCPAAQRPSPTRPS*RSPLCRQ 476
           PPP P   P  PP +PS    L  S   PSP +P  P        PSPT PS   PL   
Sbjct: 57  PPPPPTTVPPIPPSTPSPPPPLTPSPLPPSPTTPSPP------LTPSPTTPS--PPLTPS 108

Query: 475 RAPATSTALLRT*LAHARAPRTPAQPATS 389
             PA + +   T      +P TP+ P  S
Sbjct: 109 PPPAITPSPPLTPSPLPPSPTTPSPPPPS 137

 Score = 40.0 bits (92), Expect = 0.038
 Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
 Frame = -2

Query: 691 PRRAPSCAGTGCPPP------TPAAHPRSPPESPSRRGCLLYSLPSPSPFSPHLPWRCPA 530
           P   P    T  PPP      +P   P  PP SP R      S P PSP +P  P R P 
Sbjct: 121 PSPLPPSPTTPSPPPPSPSIPSPPLTPSPPPSSPLRPS----SPPPPSPATPSTPPRSPP 176

Query: 529 AQRPSPTRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPA-QPATSQPAAS 374
              PS   P  R        PA+ +          R+P TP+  P +S PA S
Sbjct: 177 P--PSTPTPPPRVGSLSPPPPASPSG--------GRSPSTPSTTPGSSPPAQS 219

 Score = 37.4 bits (85), Expect = 0.25
 Identities = 53/189 (28%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
 Frame = -2

Query: 682 APSCAGTGCPPPTPAAHPR-------SPPESPSRRGCLLYSLPSPSPFSPHLPWRCPAAQ 524
           AP   GT  PPP P   P        +PP  P+     L   P P+   P LP   P   
Sbjct: 4   APPPGGTPSPPPQPLPIPPPPQPLPVTPPPPPTALPPALPPPPPPTALPPALPPPPPPTT 63

Query: 523 RPSPTRPS*RSPLCRQRAPATSTALLRT*LAHARAPRTPAQPATSQPAASRCWGW*W*SL 344
            P P  PS  SP      P T + L         +P TP+ P T  P            L
Sbjct: 64  VP-PIPPSTPSP----PPPLTPSPL-------PPSPTTPSPPLTPSPTTPSP------PL 105

Query: 343 ASSRAHARAPSSP*SSSGSNVSLTRAYTSAAGRPASCTVRG----IAPAPS*LLKAAAPA 176
             S   A  PS P + S     L  + T+ +  P S ++       +P PS  L+ ++P 
Sbjct: 106 TPSPPPAITPSPPLTPS----PLPPSPTTPSPPPPSPSIPSPPLTPSPPPSSPLRPSSPP 161

Query: 175 QRLGCKPST 149
                 PST
Sbjct: 162 PPSPATPST 170



EST assemble image


clone accession position
1 LCL068d06_r AV629888 1 443
2 HCL099e06_r AV645201 336 740




Chlamydomonas reinhardtii
Kazusa DNA Research Institute