KCC002725A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002725A_C01 KCC002725A_c01
taTACACTCTGTATATATCTCTTCATTAACGCCAGCATCTTATCTATCTACATTAAACTA
GGAGTTTCTTGCCGCTTGCCAAGTCAGGGGCAGGATGGCCGAGCCGCTGGTCCTCAACTC
GGTCATTGGGTTCGGTGGGGCCATTGAAAATGGTCTGATAGCACATCCGGATGGGCGGAC
AATCATATATCCGCTGGGCAGCACCATCGTTCTGCGCGACCGCGCGGACCCACGGTCGCA
GGAGTTCCTCCAAGGACACAGCGATAAGGTTTCATGCCTAGCGCTATCTCGGTCGGGCAG
GTACCTGGCGTCAGGGCAAATCACGTACATGGGCTTCACCGCCGATATCATCATCTGGGA
CCTGGAGTCAAAGCAGCTTATTCATCGCATGGCGCTGCACAAGGTTAAGGTCCAGGCGCT
GGACTTCTCCTGCGATGAGCGCTTCCTGGCGTCACTAGGCGGCCAGGACGACAACGCCCT
GGTGCTGTGGGACGTGGCCAGTGGCAACGCCATCTGCGGCTCGCCCTGCAACACCAACTT
CACCAACTGCGTGAAGTTTTTCAACAACTCGCCCGACAAGCTGATTACGGCCGGCAACTT
TAACATGAACGTGTGGACCTACGACGCCGGCAACAACAAGCTGCGGCCCACAGACGCGAC
GCTGGGCACGCTGAAGCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002725A_C01 KCC002725A_c01
         (680 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB63111.1| hypothetical protein [Macaca fascicularis]            187  1e-46
gb|AAH25392.1| LOC146845 protein [Homo sapiens]                       186  4e-46
dbj|BAB30457.1| unnamed protein product [Mus musculus]                182  4e-45
ref|NP_082239.1| RIKEN cDNA 1700019F09 [Mus musculus] gi|1283904...   182  4e-45
ref|NP_659491.2| hypothetical protein LOC146845 [Homo sapiens] g...   176  3e-43

>dbj|BAB63111.1| hypothetical protein [Macaca fascicularis]
          Length = 571

 Score =  187 bits (475), Expect = 1e-46
 Identities = 92/194 (47%), Positives = 130/194 (66%), Gaps = 3/194 (1%)
 Frame = +2

Query: 107 LVLNSVIGFGGAIENGLIAHPDGRTIIYPLGSTIVLRDRADPRSQEFLQGHSDKVSCLAL 286
           L L++VIGF G +  GL  HPD   +I+PLG TI+++   + + Q FLQGH + VSCLA+
Sbjct: 14  LELDAVIGFNGHVPTGLKCHPDQEHLIFPLGCTILIQ-AINTQEQNFLQGHGNNVSCLAI 72

Query: 287 SRSGRYLASGQITYMGFTADIIIWDLESKQLIHRMALHKVKVQALDFSCDERFLASLGGQ 466
           SRSGRY+ASGQ+T+MGF ADII+WD + ++L+ R++LHK K++AL FS ++ +L SLGG 
Sbjct: 73  SRSGRYIASGQVTFMGFKADIILWDYKKRELLARLSLHKGKIEALAFSPNDLYLVSLGGP 132

Query: 467 DDNALVLWDVASGNAICGSPC---NTNFTNCVKFFNNSPDKLITAGNFNMNVWTYDAGNN 637
           DD ++V+W +A  +AICGSP    N      V F     +  +TAGN  + VW  D  N 
Sbjct: 133 DDGSVVVWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFVTAGNGTIRVWELDLPNR 192

Query: 638 KLRPTDATLGTLKR 679
           K+ PT+   G +KR
Sbjct: 193 KIWPTECQTGQMKR 206

>gb|AAH25392.1| LOC146845 protein [Homo sapiens]
          Length = 620

 Score =  186 bits (471), Expect = 4e-46
 Identities = 91/194 (46%), Positives = 130/194 (66%), Gaps = 3/194 (1%)
 Frame = +2

Query: 107 LVLNSVIGFGGAIENGLIAHPDGRTIIYPLGSTIVLRDRADPRSQEFLQGHSDKVSCLAL 286
           L L++VIGF G +  GL  HPD   +IYPLG T++++   + + Q FLQGH + VSCLA+
Sbjct: 14  LELDAVIGFNGHVPTGLKCHPDQEHMIYPLGCTVLIQ-AINTKEQNFLQGHGNNVSCLAI 72

Query: 287 SRSGRYLASGQITYMGFTADIIIWDLESKQLIHRMALHKVKVQALDFSCDERFLASLGGQ 466
           SRSG Y+ASGQ+T+MGF  DII+WD ++++L+ R++LHK K++AL FS ++ +L SLGG 
Sbjct: 73  SRSGEYIASGQVTFMGFKVDIILWDYKNRELLARLSLHKGKIEALAFSPNDLYLVSLGGP 132

Query: 467 DDNALVLWDVASGNAICGSPC---NTNFTNCVKFFNNSPDKLITAGNFNMNVWTYDAGNN 637
           DD ++V+W +A  +AICGSP    N      V F     +  +TAGN  + VW  D  N 
Sbjct: 133 DDGSVVVWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNGTIRVWELDLPNR 192

Query: 638 KLRPTDATLGTLKR 679
           K+ PT++  G LKR
Sbjct: 193 KIWPTESQTGQLKR 206

>dbj|BAB30457.1| unnamed protein product [Mus musculus]
          Length = 342

 Score =  182 bits (462), Expect = 4e-45
 Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 3/194 (1%)
 Frame = +2

Query: 107 LVLNSVIGFGGAIENGLIAHPDGRTIIYPLGSTIVLRDRADPRSQEFLQGHSDKVSCLAL 286
           L L +VIGF G + NGL  HPD   +IYPLG T++++   +   Q FL GH + VSC+ +
Sbjct: 14  LELQAVIGFNGHVPNGLKCHPDQEHLIYPLGCTVLIQ-AINTNEQNFLHGHGNNVSCVTI 72

Query: 287 SRSGRYLASGQITYMGFTADIIIWDLESKQLIHRMALHKVKVQALDFSCDERFLASLGGQ 466
           S+ G Y+ASGQ+T+MGF ADII+WD + ++LI R++LHK K++AL FS ++ +L SLGG 
Sbjct: 73  SKEGDYIASGQVTFMGFKADIILWDFKKRELIARLSLHKGKIEALAFSPNDLYLVSLGGP 132

Query: 467 DDNALVLWDVASGNAICGSPC---NTNFTNCVKFFNNSPDKLITAGNFNMNVWTYDAGNN 637
           DD ++V+W +A  +AICGSP    N      V F     +  +TAGN  + VW  D  N 
Sbjct: 133 DDGSVVVWSIAKRDAICGSPAAGLNVGNATSVVFSRCRDEMFVTAGNGTIRVWELDLPNR 192

Query: 638 KLRPTDATLGTLKR 679
           K+ PT+   G +KR
Sbjct: 193 KIWPTECQTGQMKR 206

>ref|NP_082239.1| RIKEN cDNA 1700019F09 [Mus musculus] gi|12839048|dbj|BAB24416.1|
           unnamed protein product [Mus musculus]
          Length = 620

 Score =  182 bits (462), Expect = 4e-45
 Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 3/194 (1%)
 Frame = +2

Query: 107 LVLNSVIGFGGAIENGLIAHPDGRTIIYPLGSTIVLRDRADPRSQEFLQGHSDKVSCLAL 286
           L L +VIGF G + NGL  HPD   +IYPLG T++++   +   Q FL GH + VSC+ +
Sbjct: 14  LELQAVIGFNGHVPNGLKCHPDQEHLIYPLGCTVLIQ-AINTNEQNFLHGHGNNVSCVTI 72

Query: 287 SRSGRYLASGQITYMGFTADIIIWDLESKQLIHRMALHKVKVQALDFSCDERFLASLGGQ 466
           S+ G Y+ASGQ+T+MGF ADII+WD + ++LI R++LHK K++AL FS ++ +L SLGG 
Sbjct: 73  SKEGDYIASGQVTFMGFKADIILWDFKKRELIARLSLHKGKIEALAFSPNDLYLVSLGGP 132

Query: 467 DDNALVLWDVASGNAICGSPC---NTNFTNCVKFFNNSPDKLITAGNFNMNVWTYDAGNN 637
           DD ++V+W +A  +AICGSP    N      V F     +  +TAGN  + VW  D  N 
Sbjct: 133 DDGSVVVWSIAKRDAICGSPAAGLNVGNATSVVFSRCRDEMFVTAGNGTIRVWELDLPNR 192

Query: 638 KLRPTDATLGTLKR 679
           K+ PT+   G +KR
Sbjct: 193 KIWPTECQTGQMKR 206

>ref|NP_659491.2| hypothetical protein LOC146845 [Homo sapiens]
           gi|21753989|dbj|BAC04435.1| unnamed protein product
           [Homo sapiens]
          Length = 630

 Score =  176 bits (446), Expect = 3e-43
 Identities = 86/184 (46%), Positives = 122/184 (65%), Gaps = 3/184 (1%)
 Frame = +2

Query: 137 GAIENGLIAHPDGRTIIYPLGSTIVLRDRADPRSQEFLQGHSDKVSCLALSRSGRYLASG 316
           G +  GL  HPD   +IYPLG T++++   + + Q FLQGH + VSCLA+SRSG Y+ASG
Sbjct: 34  GHVPTGLKCHPDQEHMIYPLGCTVLIQ-AINTKEQNFLQGHGNNVSCLAISRSGEYIASG 92

Query: 317 QITYMGFTADIIIWDLESKQLIHRMALHKVKVQALDFSCDERFLASLGGQDDNALVLWDV 496
           Q+T+MGF ADII+WD ++++L+ R++LHK K++AL FS ++ +L SLGG DD ++V+W +
Sbjct: 93  QVTFMGFKADIILWDYKNRELLARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVWSI 152

Query: 497 ASGNAICGSPC---NTNFTNCVKFFNNSPDKLITAGNFNMNVWTYDAGNNKLRPTDATLG 667
           A  +AICGSP    N      V F     +  +TAGN  + VW  D  N K+ PT+   G
Sbjct: 153 AKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNGTIRVWELDLPNRKIWPTECQTG 212

Query: 668 TLKR 679
            LKR
Sbjct: 213 QLKR 216



EST assemble image


clone accession position
1 MXL070a09_r BP097101 1 423
2 MXL071b10_r BP097169 3 391
3 HCL098e05_r AV645122 16 480
4 MXL056d05_r BP096309 292 680




Chlamydomonas reinhardtii
Kazusa DNA Research Institute